Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g1158 ATGCCATCTTCAGTAAAGCTCTCCGTGAAGAATATAAAGTACAAATCTAGGGAAATTGTCGTCGAGGACCCGAATAATTGCCTTCAAAGTCAGCTTCAAAACCTCAGATTATCTGCCTCTCCTTTCCACTTCAAACTCAATCATTCCTTTGAGCTACAAGCCTTTACCTTCTTCAATTGTTCAGCAAATCGTTCAGATTCAAGTTATTTTAAGTCCATCAAATCGTTCAGCAAATCTTGCAGTTTTCTCCCAGGTAATCCACTTTATGCTGTTGATTCCAGCACTAGTCTCACTGATTTGGATGTATCCTCTTGCCGTAGGATTTACAACCTTTCACTCCCGACTTATTATATATATGAGGGAGAAAATAGGCTTTATTTGAAGTGGGAAGAATCAATATGTGGAAACTGCGAAGCAGAAGGTAAGAAATGCAGACTCAAAAAAAGCAATGGCAAGAAACCTGAAACGGAATGTATCACAGATACTAAAGTAAGCCAAGATGAGTGCATGGCATCGAGTAAATGCAGCGACCAGGGTCCAGCCATCAGGTTTCCCTTTCAGCTTAAAGACCGCCACCCACACCACTGTGGCTGCCCTTTGTTTGAGCTATCTTGCACAGAGAAGAATCAGACGATGCTGGAGCTGCCGCATTCAGTAAAGTTCTTGGTAAAGAATATAAACTACAAATCTCAGCAAATTCTCGTCCATGACCCTGATTATTGCCTTCCAAGACAGCTTGGAAATCTCGATTTAGCTGCCACCCCCTTCAAATTCTCTGAAGAATTGGAGAACTCCACTTTCTTCATTTGTTCCTCAGTAAATGGACAAACTTTTGGCGAGCGTGTCCCTTGCCTTGATGTCCCTGGGTACCAAGTTTGGAAGTTTCCATCTTCAGAGGTCATGAGTTTCCCAGAACTGTTACCGTGCGGCAACAAGATGTACGCTTCATCACTTCCTAAGGATGAGTATGGGGAAATAAAAAATAATTTTCATCTCAACTGGACCACTCCTTCACACTGCAAAGGAAAAGGCGTAATAGTTGGTTTTCCTCTGCTCATGTCAATTATCATCGCACTATACAAAGTCTATGATTCAAATAAAATGGGAAGAGAATATAAGATAAGGATTGAGAAGTTTCTGGAAGATTATAGAGCTCTTAAGCCCTCAAGATACACCTATATTGATATAAAGAAGATTACAAATCAGTTTAAGGACAAATTAGGTGAAGGAGGCTATGGAATTGTGTATAAAGGAAAGTTATCCAATGAAGTTCTTGTTGCAGTAAAGATTCTAAACAATTCCAAGGGAAATGGGGAAGAGTTCATTAATGAAGTAGGAACAATGGGTAGAATTCACCATGTTAATGTAGTTCGTTTGGTCGGATTTTGTGCTGAAGGATCTAAACGAGCTCTCATTTATGAGTTCCAACCAAATGAATCTCTAGAGAAGTTCATTTTCTCAGAAGCAGTTAAGAACCATTCTCTTGGTTGGAAGAAGCTTCAAGGTATTGCTGTAGGCATAGCCAAAGGAATTGAATATCTTCACCAAGGTTGTGATCAAAGAATCTTACATTTTGATATCAAACCGCATAATATTTTGCTTGATCATAACTTTAATCCAAAAATTTCTGATTTTGGTCTAGCCAAAGTATGCTCGAAGGAACAAAGTAGAGTTTCTATGACAACGGCAAGAGGTACGATGGGTTATATCGCACCAGAAGTTTTATCTCGAAATTTTGGGAGTGTATCATATAAATCAGATGTCTATAGCTTTGGAATGTTATTGCTAGAAATGGTTGGAGGAAGGAAGAACATTGACGTTAGTGTGGAGAATGCTAGTCAAGTTTACTTCCCGGAATGGGTCTATAATCATTTAAATCAAGGCGAAGAGATACACATTCGTATTGAAGAAGAGAGAGATTTTGAAATAGCAAAAAAGTTAACAATTGTGGGACTTTGGTGCATTCAATGGTGTCCAATAAATCGTCCTTCAATGAAGGATGTAGTTCAAATGTTGGAAGAAGAAAGAAATAATATAATTTGTGGATGTGAGTTTGAGAGAAAGTTGAGTTGCAACATTAATGGTGATAAGAGTACGGTGAAGCATGTTGGTATCATGGATGATGACGCAATTGGTTCATCATTAGCCATGAATGTTGAGGCTAGGGTTTAG 2172 0.389 MPSSVKLSVKNIKYKSREIVVEDPNNCLQSQLQNLRLSASPFHFKLNHSFELQAFTFFNCSANRSDSSYFKSIKSFSKSCSFLPGNPLYAVDSSTSLTDLDVSSCRRIYNLSLPTYYIYEGENRLYLKWEESICGNCEAEGKKCRLKKSNGKKPETECITDTKVSQDECMASSKCSDQGPAIRFPFQLKDRHPHHCGCPLFELSCTEKNQTMLELPHSVKFLVKNINYKSQQILVHDPDYCLPRQLGNLDLAATPFKFSEELENSTFFICSSVNGQTFGERVPCLDVPGYQVWKFPSSEVMSFPELLPCGNKMYASSLPKDEYGEIKNNFHLNWTTPSHCKGKGVIVGFPLLMSIIIALYKVYDSNKMGREYKIRIEKFLEDYRALKPSRYTYIDIKKITNQFKDKLGEGGYGIVYKGKLSNEVLVAVKILNNSKGNGEEFINEVGTMGRIHHVNVVRLVGFCAEGSKRALIYEFQPNESLEKFIFSEAVKNHSLGWKKLQGIAVGIAKGIEYLHQGCDQRILHFDIKPHNILLDHNFNPKISDFGLAKVCSKEQSRVSMTTARGTMGYIAPEVLSRNFGSVSYKSDVYSFGMLLLEMVGGRKNIDVSVENASQVYFPEWVYNHLNQGEEIHIRIEEERDFEIAKKLTIVGLWCIQWCPINRPSMKDVVQMLEEERNNIICGCEFERKLSCNINGDKSTVKHVGIMDDDAIGSSLAMNVEARV* 724
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g1158 723 Pfam Protein kinase domain 403 670 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi16g1158 723 SUPERFAMILY Protein kinase-like (PK-like) 385 673 IPR011009 -
Vvi16g1158 723 ProSitePatterns Protein kinases ATP-binding region signature. 407 429 IPR017441 GO:0005524
Vvi16g1158 723 PANTHER RUST RESISTANCE KINASE LR10-RELATED 373 675 IPR045874 GO:0004672
Vvi16g1158 723 SMART serkin_6 401 672 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi16g1158 723 ProSiteProfiles Protein kinase domain profile. 401 680 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi16g1158 723 FunFam serine/threonine-protein kinase PBS1-like 371 475 - -
Vvi16g1158 723 ProSitePatterns Serine/Threonine protein kinases active-site signature. 522 534 IPR008271 GO:0004672|GO:0006468
Vvi16g1158 723 FunFam PR5-like receptor kinase 476 681 - -
Vvi16g1158 723 Gene3D Transferase(Phosphotransferase) domain 1 477 683 - -
Vvi16g1158 723 Pfam Wall-associated receptor kinase galacturonan-binding 173 237 IPR025287 GO:0030247
Vvi16g1158 723 Gene3D Phosphorylase Kinase; domain 1 376 475 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g1158 Vvi-Chr16 20146548 20151109 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g1158 370 673 Receptor kinase-like Gene Family AT1G66980 54.341 1.90e-104 342
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Vvi16g1158 Pkinase 1.1e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g1158 - - vvi:100854309 1357.04