Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g1156 ATGATGCTCAGAGAAACAAAAGTTGTGGCATTAACAGTCTTCCACACTTTCTTGCTTGCAATTTGTGCTGCTAATAGAAACCAGATATGCAGGCCTTCTTCTTGTGGAGATATTAAAAAAATTAGCAACCCTTTCCGATTGAAAGGTGATCCGTCTGGGTGTGGTGATCCTGACTATGAATTGGTCTGCGAAAACAATCGTACTATGGTAAACCTGGACCATGGGAAATACTATGTTGCCGATATCAACTACGATAACTACACCATTCGGATAGTGGATCCTGGGGTGGAAAAGGGCAACTGTTTCTCCGCTCCTCTCTATTCCTTGACAAGAGAAATATTCCGTTCTGATAAGAGAGCATATTTTTTGAATCCGCATGAAGCGACCAATACAACGGTTTTGATGAACTGCGAGCAGTCAATAAGTGATGGCAACTATATTCCTATCACTCCTTGCAACAGAAGCAATGTGACTTCATCTTCCTCACAAGCATATGTTTATGCACTAGTCGGCGGAGGAGACTCCCTGCTGGTGAATGATATTAAGTATTCATGCACCATTAGCAGGACTATTATTACTCAATTCTTGAAGCCCGGCAATCTTTCAATGTCAGATTTGCAAGAAATACTTCTTCAGGGGCTTGATATTTCATTCTTGCCCTTCCGTTGCAAAAGCGAATGCCATGTGAAAGGGCCATACTGCGATCTAGATTGGACCAAAAATACTGTAAAATATCGGAGCACCTTTTCAAGCAACGGTGTGAGAGAAAGATACAACAACTACTACCACTATGAAACTGCACTTTACCTTGGTTGGATAATAAGATACATAGGCATGATCATCATCGGGAGGGCCATACCTGGTATTTTGTGTTTGCTTGTCTATTTAATCTACAAGTTTCGACGAAGACACTTATCATTGGATGATGGTATTGAAGAATTTCTACATAGCCATAAAAATCTTCAGCCAATCAAATACTCATATTCAGAGATAAAAAAGATGACTCATAATTTTAAGAATAAATTAGGTCAAGGAGGTTTTGGCTCTGTGTATAAAGGAAAACTCCAAAGTGGTCACATTGTAGCTGTAAAAATGTTAGTTATGTCAAAAGCTAATGGGCAAGATTTCATCAATGAAGTTGCTACAATCGGAAGGATTCATCATGTTAATGTTGTGAGACTTGTTGGATTTTGTATACAGAGATCAAAATGGGCTCTTGTATATGACTTCATGCCAAATGGGTCTCTTGATAAGTTTGTTTTTCTTGACCAAGGAAACAACATTCCCTTGAATTGGGAAAGATTATACAAGATTGCACTTGGAGTGGGACGTGGGATTGAATACTTACATCAGGGATATGACATGCAAATTCTCCATTTTGATATCAAGCCACACAACATTCTTCTTGATGAAGACTTCACACCAAAAGTTTCAGATTTTGTTTTGGAATGTTGTTATTGGAAATGGTAG 1470 0.3878 MMLRETKVVALTVFHTFLLAICAANRNQICRPSSCGDIKKISNPFRLKGDPSGCGDPDYELVCENNRTMVNLDHGKYYVADINYDNYTIRIVDPGVEKGNCFSAPLYSLTREIFRSDKRAYFLNPHEATNTTVLMNCEQSISDGNYIPITPCNRSNVTSSSSQAYVYALVGGGDSLLVNDIKYSCTISRTIITQFLKPGNLSMSDLQEILLQGLDISFLPFRCKSECHVKGPYCDLDWTKNTVKYRSTFSSNGVRERYNNYYHYETALYLGWIIRYIGMIIIGRAIPGILCLLVYLIYKFRRRHLSLDDGIEEFLHSHKNLQPIKYSYSEIKKMTHNFKNKLGQGGFGSVYKGKLQSGHIVAVKMLVMSKANGQDFINEVATIGRIHHVNVVRLVGFCIQRSKWALVYDFMPNGSLDKFVFLDQGNNIPLNWERLYKIALGVGRGIEYLHQGYDMQILHFDIKPHNILLDEDFTPKVSDFVLECCYWKW* 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g1156 489 Gene3D Phosphorylase Kinase; domain 1 307 410 - -
Vvi16g1156 489 Pfam Protein kinase domain 338 480 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi16g1156 489 Pfam Wall-associated receptor kinase galacturonan-binding 30 93 IPR025287 GO:0030247
Vvi16g1156 489 SMART serkin_6 336 488 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi16g1156 489 FunFam serine/threonine-protein kinase PBS1-like 308 410 - -
Vvi16g1156 489 ProSiteProfiles Protein kinase domain profile. 336 489 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi16g1156 489 PANTHER RUST RESISTANCE KINASE LR10-RELATED 309 482 IPR045874 GO:0004672
Vvi16g1156 489 ProSitePatterns Serine/Threonine protein kinases active-site signature. 457 469 IPR008271 GO:0004672|GO:0006468
Vvi16g1156 489 FunFam Os07g0541700 protein 411 486 - -
Vvi16g1156 489 ProSitePatterns Protein kinases ATP-binding region signature. 342 364 IPR017441 GO:0005524
Vvi16g1156 489 SUPERFAMILY Protein kinase-like (PK-like) 315 480 IPR011009 -
Vvi16g1156 489 Gene3D Transferase(Phosphotransferase) domain 1 411 487 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g1156 Vvi-Chr16 20104344 20107651 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g1156 13 482 Receptor kinase-like Gene Family AT1G66910 31.313 7.41e-59 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Vvi16g1156 Pkinase 7.2e-29 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g1156 - - vvi:100854221 963.755