Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g1155 ATGAGAGGGGGCCGAGGTGAGTGCCCGACATCAAATCGTTGTGGCGTCCAGGGTCCACTCATCCAGTTCCCTTTCCGTCTAAAAAGCCAGCCACACCACTGTGGATACCCGGGATTTGTTTTATCTTGCACTGAGAATAATCAGATCATGCTGGAGCTGCCAGATTCGGTAAAGCTCTTGGTGAAGAATATAATCTACAAATCCAGGGAAATCATTGTCCAGAACCCGGATAATTGCCTTGAGAGACAGCTTCGAAACCTTAGTTTAGCTTCGTCCCCCTTCCAGTTCAAATTTGAGGGGGACGTCACCTTCTTCAATTGTTCCTCACTTAAACGGCAGAATCATTTGCTGCTCACTTCATCCCTTGCCTTTCTATCCCTGGTAACCCAGTTTATGCCGTTGACTCCTTCTATCCTCTCCAAAATATGGACCTATCGTCTTGCCGCAGGCTTTACAACGCTTCAGTTGGATATCATGTCTTTACGGATTATACATTCAATGGAAGTGCGTTTTCTTTGA 519 0.4624 MRGGRGECPTSNRCGVQGPLIQFPFRLKSQPHHCGYPGFVLSCTENNQIMLELPDSVKLLVKNIIYKSREIIVQNPDNCLERQLRNLSLASSPFQFKFEGDVTFFNCSSLKRQNHLLLTSSLAFLSLVTQFMPLTPSILSKIWTYRLAAGFTTLQLDIMSLRIIHSMEVRFL* 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g1155 172 Pfam Wall-associated receptor kinase galacturonan-binding 8 73 IPR025287 GO:0030247
Vvi16g1155 172 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 7 113 IPR046948 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g1155 Vvi-Chr16 20102225 20102743 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g1155 14 107 C3H Transcription Factor Family AT2G25410 41.053 1.13e-16 74.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g1155 - - vvi:100243119 229.565