Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g1154 ATGGTAACAGGCACAATCTTTGGTTTCTTTCTACTTGTGTTAGTAATTGCTATGTTTTATCGTCTCTATAGCTCAGATAAATTAGAAAGAGAGAATGGAATAAAGGTTAAAAGGTTTCTGGAAGACTATGAAGCTCTCAAGCCCTCAAGATACTCCTATGCTGATATTAAAAGGATTACAAATCAATTCAAAGATAAATTAGGCCAAGGAGGTTATGGAACCGTGTACAAGGGAAAGCTTTCACATGAAGTTTTTGTTGCAGTAAAAATCCTTAATAATTCTCAAGGAAATGGAGAAGAGTTCATTAATGAAGTGGCAACGATGGGTACAATCCACCATGTTAATATAGTTCGCTTAGTCGGATTTTGTGCTGATGGATTTAAACGAGCTCTAATTTATGAGTACTTACCAAATGAGTCATTAGAGAAGTTCATATTTTCAAGAGATGTTAAGAACTATTCACTCAGTTGGAAGAAACTTCAAGAAATTGCTATAGGTATAGCGAAAGGAATTGAGTATCTTCATCAAGGTTGTGATCAAAGAATCCTCCATTTTGATATCAAACCTCATAATATTTTACTTGATCACAACTTTAATCCAAAGATTTCTGACTTTGGTTTAGCCAAATTGTGCTCCAAGGAACAAAGTGCGGTCTCTATGACCGTTGCAAGGGGAACAATAGGCTACATTGCTCCAAAAGTGTTGTCTAGGAATTTTGGGAATGTGTCTTATAAGTCAGATGTTTATAGTTTTGGAATGTTGTTACTTGAAATGGTTGGAGGGAGGAAGAACATTGATGTTAGTGTGGAGAGTACTAGCCAAGTATACTTCCCAGAATGGATTTATAATCATTTGGATAGAGGGGAAGAATTGTATATTCGGATTGAAGAAAAAGGAGATGTTGAGATTGCAAAGAAATTAGCAATTGTGGGACTCTCATGTATTCAATGGTTTCCAATGGATCGTCCTTCCATGAAAATTGTGGTTCAAATGTTGGAAGGAAGAGGCAAGTTAACCATGCCTCCTAATCCTTTTGCTTCAACAACTCCAACAAAGACAAACTTGAGCAAACCAAGAAGTGTTTTTCAACAAGAGTTAGCAATCATTTCAGAAATAGAATAA 1122 0.3574 MVTGTIFGFFLLVLVIAMFYRLYSSDKLERENGIKVKRFLEDYEALKPSRYSYADIKRITNQFKDKLGQGGYGTVYKGKLSHEVFVAVKILNNSQGNGEEFINEVATMGTIHHVNIVRLVGFCADGFKRALIYEYLPNESLEKFIFSRDVKNYSLSWKKLQEIAIGIAKGIEYLHQGCDQRILHFDIKPHNILLDHNFNPKISDFGLAKLCSKEQSAVSMTVARGTIGYIAPKVLSRNFGNVSYKSDVYSFGMLLLEMVGGRKNIDVSVESTSQVYFPEWIYNHLDRGEELYIRIEEKGDVEIAKKLAIVGLSCIQWFPMDRPSMKIVVQMLEGRGKLTMPPNPFASTTPTKTNLSKPRSVFQQELAIISEIE* 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g1154 373 Pfam Protein kinase domain 63 330 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi16g1154 373 FunFam serine/threonine-protein kinase PBS1-like 30 135 - -
Vvi16g1154 373 ProSiteProfiles Protein kinase domain profile. 61 346 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi16g1154 373 FunFam PR5-like receptor kinase 136 342 - -
Vvi16g1154 373 ProSitePatterns Serine/Threonine protein kinases active-site signature. 182 194 IPR008271 GO:0004672|GO:0006468
Vvi16g1154 373 PANTHER RUST RESISTANCE KINASE LR10-RELATED 35 349 IPR045874 GO:0004672
Vvi16g1154 373 Gene3D Phosphorylase Kinase; domain 1 34 135 - -
Vvi16g1154 373 SMART serkin_6 61 332 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi16g1154 373 Gene3D Transferase(Phosphotransferase) domain 1 136 339 - -
Vvi16g1154 373 SUPERFAMILY Protein kinase-like (PK-like) 46 333 IPR011009 -
Vvi16g1154 373 ProSitePatterns Protein kinases ATP-binding region signature. 67 89 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g1154 Vvi-Chr16 20099565 20100798 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g1154 41 372 Receptor kinase-like Gene Family AT1G66910 51.032 1.16e-112 341
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Vvi16g1154 Pkinase 1.7e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g1154 - - vvi:100854184 747.273