Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g1153 ATGACTCATAATTTTAAGAATAAATTAGGTGAAGGAGGTTTTGGCTCTGTGTACAAAGGAAAACTCCGAAGTGGTCACATTGTAGCTGTAAAAATGTTAGTTATGTCAAAAGCTAATGGGCAAGATTTCATCAATGAAGTTGCTACAATTGGAAGAATCCATCATGTTAATGTGGTGGGACTTGTTGGATTTTGTATACAAGGATCAAAATGGGCTCTCGTATATGACTTCATGCCGAATGAGTCTCTTGATAAGTTTGTTTTTCTTGACCAAGGAAATAACATTCCTTTGAATTGGGAAAGATTATACAAAATTGCACTTGGAGTGGCGAGTGGGATTGAACACTTACATCAAGGATGTGATATGCAAATTCTCCATTTTGATATCAAGCCACACGACATTCTTCTTAATGAAGATTTTACACCAAAAGTTTCAGATTTTGGCCTTGCAAAATTACATTCAACAGATGAAAGTATTGTGTCTCTCACTGCTTCTAGAGGAACATTGGGATATATAGCTCCAGAGTTGTTCTATAAAAATATTGGAGGAGTTTCATATAAAGCTAATATTTATAGTTTTGGAATGCTATTGTTAGAAATTGTGGGGAGAAGGAAGAATGTGAATGCGTTTGCAGAGCAGTCAAGTCAAATATACTTTCCATCATGGATTTATGATCGATATGATCAAGGAGAGGACATAGAAATAGGACAGGCCACTAAGGATGAAAAAAAGTATGTGAGGAAAATGGTGATAGTTGCACTATGGTGTATACAAATGAAGCCTGTAGATCGTCCTTCAATGAGCAAAGCATTGGAGATGCTTGAAGGAGAGGTTGAACTCTTGAAAATGCCTCCTAAGCCAACTCTATGGTCTATTGAGAATCACGAGCAATCCATGGTAGTGGTACCAATTTCATCATCTAATTCCATGGGTACAATCACCTTAAATGGAAGGTACTGCTACACCATCTAG 972 0.3693 MTHNFKNKLGEGGFGSVYKGKLRSGHIVAVKMLVMSKANGQDFINEVATIGRIHHVNVVGLVGFCIQGSKWALVYDFMPNESLDKFVFLDQGNNIPLNWERLYKIALGVASGIEHLHQGCDMQILHFDIKPHDILLNEDFTPKVSDFGLAKLHSTDESIVSLTASRGTLGYIAPELFYKNIGGVSYKANIYSFGMLLLEIVGRRKNVNAFAEQSSQIYFPSWIYDRYDQGEDIEIGQATKDEKKYVRKMVIVALWCIQMKPVDRPSMSKALEMLEGEVELLKMPPKPTLWSIENHEQSMVVVPISSSNSMGTITLNGRYCYTI* 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g1153 323 FunFam PR5-like receptor kinase 78 286 - -
Vvi16g1153 323 SUPERFAMILY Protein kinase-like (PK-like) 5 275 IPR011009 -
Vvi16g1153 323 Pfam Protein kinase domain 5 272 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi16g1153 323 PANTHER RUST RESISTANCE KINASE LR10-RELATED 1 294 IPR045874 GO:0004672
Vvi16g1153 323 PIRSF ILK 2 292 - -
Vvi16g1153 323 Gene3D Transferase(Phosphotransferase) domain 1 78 292 - -
Vvi16g1153 323 ProSiteProfiles Protein kinase domain profile. 3 281 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi16g1153 323 ProSitePatterns Protein kinases ATP-binding region signature. 9 31 IPR017441 GO:0005524
Vvi16g1153 323 Gene3D Phosphorylase Kinase; domain 1 1 77 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g1153 Vvi-Chr16 20086379 20087350 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g1153 1 293 Receptor kinase-like Gene Family AT5G38280 50.671 8.06e-106 322
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Vvi16g1153 Pkinase 2.3e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g1153 - - vvi:100853180 592.038