Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g1152 ATGAACTGCGAGCAGCCAATAAGAGATAGCAACTATATTCCTATCACTCCTTGCGACAGAAGCAATGTGACTTCATCTTCCTCACAAGCACATGTTTATGCACTAGTCGGAGGAAAATACATGGAAGCGGGAGATATTAAGTATTCATGCGCCATCCTCAGGACTATAACCACCCAATTCTTGAAGCCTGGCAATCTTTCAATGTCAGATTTGCAAAAAGTGCTGCTTCTGGGGCTTGACCTTTCATTCTTGCGCTTGCGTTGCGAATGCTTTGCGGAAGAATACTGCGATCCAGATATCACCAAGAATACTGTAAAATGTATAAGCTACTCCAGGAATTGGTTCTCTGATTATTTGGAATCTTTAAGGGGTCAAGGAGGTTTTGGCTCTGTGTACAAAGGAAAACTCCGAAGTGGACGCATTGTGGCTGTAAAAATGTTAGTTATGTCAAAAGCTAATGGGCAAGATTTCATCAATGAAGTTGCTACAATCGGAAGGATTCATCATGTTAATGTGGTGAGACTTGTTGGATTTTATATACAGGGATCAAAATGGGCTCTTGTATATGACTTCATGCCCAATGGATCTCTTGATAAGTTTGTTTTTCTTGACCAAGGAAACAACATTCCTTTGAGTTGGGAAAGATTATACAAGATTGCACTTGGAGTGGCACGTGGGATTGAATACTTACATCAAGGATGTGACATGCAAATTCTCCATTTTGATATCAAGCCACACAACATTCTTCTTGATGAAGACTTCACACCAAAAGTTTCAGATTTTGGTCTTGCAAAATTATATTCAATAGATGACAATATCGTATCCATCACTGCTGCTAGAGGAACCTTGGGCTACATTGCTCCCGAATTATTCTACAAAAACCTTGGAGGTGTATCATTTAAGGCTGATGTTTATAGTTTTGGAATGTTGTTATTGGAAATGGTGGGGAAAAGGAAGAATGTGAATGCATTTGCAGAACATTCTAGTCAAATATATTTCCCATCATGGATTTATAATAGATATGATCAAGGAGAGGACATGGAAATGGGAGATGCCACTGAGGATGAAAAAAAGTATGTAAGGAAAATGGTGATAGTTGCACTATGGTGTATACAAATGAAGCCTATGGATCGTCCTTCAATGAGCAAAACATTGGAGATGCTTGAAGGAGCGGTTGAACTCTTGAAAATGCCTCCTAAGCCAACTCTATGGTCTATTGAGAATCATGAGCAATCCATGGTAGAGTTACCAATTTCATCATCCAATTCCATGGGTACAATCAGCTTATATGGAAGGTAG 1299 0.3934 MNCEQPIRDSNYIPITPCDRSNVTSSSSQAHVYALVGGKYMEAGDIKYSCAILRTITTQFLKPGNLSMSDLQKVLLLGLDLSFLRLRCECFAEEYCDPDITKNTVKCISYSRNWFSDYLESLRGQGGFGSVYKGKLRSGRIVAVKMLVMSKANGQDFINEVATIGRIHHVNVVRLVGFYIQGSKWALVYDFMPNGSLDKFVFLDQGNNIPLSWERLYKIALGVARGIEYLHQGCDMQILHFDIKPHNILLDEDFTPKVSDFGLAKLYSIDDNIVSITAARGTLGYIAPELFYKNLGGVSFKADVYSFGMLLLEMVGKRKNVNAFAEHSSQIYFPSWIYNRYDQGEDMEMGDATEDEKKYVRKMVIVALWCIQMKPMDRPSMSKTLEMLEGAVELLKMPPKPTLWSIENHEQSMVELPISSSNSMGTISLYGR* 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g1152 432 ProSiteProfiles Protein kinase domain profile. 117 395 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi16g1152 432 Pfam Protein kinase domain 124 386 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi16g1152 432 CDD STKc_IRAK 124 390 - -
Vvi16g1152 432 ProSitePatterns Serine/Threonine protein kinases active-site signature. 238 250 IPR008271 GO:0004672|GO:0006468
Vvi16g1152 432 SMART serkin_6 117 388 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi16g1152 432 SUPERFAMILY Protein kinase-like (PK-like) 123 389 IPR011009 -
Vvi16g1152 432 Gene3D Phosphorylase Kinase; domain 1 124 192 - -
Vvi16g1152 432 Gene3D Transferase(Phosphotransferase) domain 1 193 397 - -
Vvi16g1152 432 FunFam PR5-like receptor kinase 192 400 - -
Vvi16g1152 432 PANTHER RUST RESISTANCE KINASE LR10-RELATED 123 408 IPR045874 GO:0004672
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g1152 Vvi-Chr16 20059691 20062915 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g1152 109 407 Receptor kinase-like Gene Family AT5G38280 51.475 1.10e-105 325
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Vvi16g1152 Pkinase 2.2e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g1152 - - vvi:100252559 626.706