Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g1151 ATGTTAGTAATTGTTGTGCCTTATCGTGCCTATAGCTCAAATAAAGTAGAAAGAGATAATAGAGTAAAGGTTAAAAAGTTTCTAGAAGACTATGAAGCTCTCAAGCCCTCAAGATACTCCTATGCTGATATTAAAAGGATTGCAAGTCAATTCAAAGATAAATTAGGGGAAGAAGGATATGGAACCGTGTATAAAGGAAAGCTTTCAGATGAAGTTTTTGTTGCAGTAAAAATCCTTAACAATTCTCAAGGAAATGGGGAAGAGTTCATTAATGAAGTAGCAACAATGGGTACAATCCACCATGTTAATATAGTTCGTTTAGTTGGATTTTGTGCTGATAGATTTAAACGAGCTCTAATTTATGAGTACTTACCAAATGAGTCATTGGAGAAGTTCATATTTTCAAAAGTTGTCAAGAACTATTCACTTAGTTGGAAGAAACTTCAAGAAATTGCTATAGGTATAGCAAAAGGAATTGAGTATCTTCATCAAGGTTGTGATCAAAGAATCCTTCATTTTGATATCAAACCTCATAATATTTTACTTGACCACAACTTTAATCCAAAGATTTCTGACTTTGGTTTAGCCAAATTGTGCTCCAAGGAACAAAGTGCAGTCTCTATGACAATTGTAAGGGGAACAATGGGCTATATCGCTCCAGAAGTGTTATCTAGGAATTTTGGGAATGTGTCTTATAAGTCAGATGTTTATAGTTTTGGAATGTTGTTACTTGAAATGGTTGGAGGAAGAAAGAACATTGATGTTAGTGTGGAGAGTACTACCCAATTATATTTCCCAGAATGGATTTATAATCATTTGGATATAGGGGAAGAATTGCATATTCGAATTGAAGAAGAAGGAGATGTTGAGATTGCAAAGAAATTAGCAATTGTGGGACTTTCATGTATTCAGTGGTGTCCAGTGGATCGTCCTTCCATGAAAATTGTGGTTCAAATGTTGGAAGGAGAAGGAGACAAGTTAACCATGCCTCCTAACCCTTTTGCTTCAACAGTTCCAACAAACTTGAGCAAGCCAGGTAGAGTTTTTCAACAAGAGTTGTCAATAATTTCAGAACTAGAGTAA 1083 0.3509 MLVIVVPYRAYSSNKVERDNRVKVKKFLEDYEALKPSRYSYADIKRIASQFKDKLGEEGYGTVYKGKLSDEVFVAVKILNNSQGNGEEFINEVATMGTIHHVNIVRLVGFCADRFKRALIYEYLPNESLEKFIFSKVVKNYSLSWKKLQEIAIGIAKGIEYLHQGCDQRILHFDIKPHNILLDHNFNPKISDFGLAKLCSKEQSAVSMTIVRGTMGYIAPEVLSRNFGNVSYKSDVYSFGMLLLEMVGGRKNIDVSVESTTQLYFPEWIYNHLDIGEELHIRIEEEGDVEIAKKLAIVGLSCIQWCPVDRPSMKIVVQMLEGEGDKLTMPPNPFASTVPTNLSKPGRVFQQELSIISELE* 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g1151 360 FunFam serine/threonine-protein kinase PBS1-like 17 123 - -
Vvi16g1151 360 Gene3D Transferase(Phosphotransferase) domain 1 124 329 - -
Vvi16g1151 360 FunFam PR5-like receptor kinase 124 331 - -
Vvi16g1151 360 SMART serkin_6 49 320 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi16g1151 360 ProSiteProfiles Protein kinase domain profile. 49 335 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi16g1151 360 Gene3D Phosphorylase Kinase; domain 1 19 123 - -
Vvi16g1151 360 PANTHER RUST RESISTANCE KINASE LR10-RELATED 23 337 IPR045874 GO:0004672
Vvi16g1151 360 Pfam Protein kinase domain 51 318 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi16g1151 360 ProSitePatterns Serine/Threonine protein kinases active-site signature. 170 182 IPR008271 GO:0004672|GO:0006468
Vvi16g1151 360 SUPERFAMILY Protein kinase-like (PK-like) 34 321 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g1151 Vvi-Chr16 20056048 20057130 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g1151 29 359 Receptor kinase-like Gene Family AT1G66910 50.742 4.97e-114 344
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Vvi16g1151 Pkinase 3.7e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g1151 - - vvi:100262818 721.079