Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g1149 ATGAGATTGTTTGCAGAGATTAATGGAGGGAGCCAAGATGATGAGTGCAAGGCGTCAAGGTGCAGTCACCATGGTCCAGTCATCCGGTTTCCGTTCAGGCTAAAACACCAGCCAGAACACTGTGGATATCCGGAGTTTGAGTTATCATGCTCAGAAGAGAAGCGGACCATACTAGAGCTGCCCTCTTCAGTAATACTCTGGGTGAAGGAAATAAATTACACTTCTCAGGAGATTTTTGTCCAATACCCGGATGATTGCCTTCCAAGGCAGATTCTAAACCTTAATTTACCTGCCTCTTTCTTCACATACTACACAAACGACTTCTCCTTCTTCAATTGTTCTGAAAGTAAAGCAGAGATATATGAGCTTAGGTCCATCCCTTGCAGTTTTCTCTCGAGTAACCCAGTTTATGTCGCTCCTTCCTATTACACTCTTGCTGGAGTGAACTTATCATCTTGCCGGAAGATTTTCAATGCTACACTCCCATTTTTTTATATAAATGAAGGGGAATTTTGGATGAAGTGGTTAAAACCTATGTGCGGAAACTGTGAAGCAAAAGGAAACAAGTGCCAACGGAAGAAGAATAATAGCAGGGAACCTGAAATCAATTGTTCTGAAGATATAACAAATCAGCTATCATATGCTGATAATCAACTTTGGTCCATCCCTTACAGTATTCTCTCAAGTAACCCAGTTTATGTCGCTCCTTCCTCTTACTCTCTCGCTGAAGTGAACTTATCCTCTTGCCAGAAGATTTTCAATGCTACACTCCCAGATAATTATATGTTTGATCATGAAAGGGAATTTTATATGAATTGGTCAAAACCTATGTGCGGAAACTGTGAAGCAAAAGGAAACAAGTGCCAACGGAAGAAGAATAATAGCACGGAACCTGAAATCGAATGCATTGATAAACCAGCAAAAGGTGCTCCAATGGATAAAATGGTGCTTACAGAAGCAATCCTTGGTTTCCTTCATTTCACTTTTGGAATCTTTATAATATTTATTGTCTATCGCTCTAATAAGTTGAAAAGAGAGCATAGAGTAAATATTCAAAAGTTTTTGGAAGATTATAGAGCTCTCAAGCCCTCAAGGTACTCCTATGCTGATATTAAAAAGATCACAAATAATTTCAAGGACAAACTAGGTCAAGGAGGTTATGGGACTGTTTATAAAGGAAAGCTCTCAAATGAAGTTTTTGTTGCAGTAAAGATCCTTGATGATTTCAAAGGAAACGGGGAAGATTTCATTAATGAAGTAGGAACAATGAGTACCATACATCATGTTAACGTGGTTCGGTTGCTCGGGTTTTGTGCAGATGGATATAAGCGAGCTTTGATTTATGAATTTTTACCAAATGAGTCACTAGACAAGTTCATATTTTCAGCATTTGGCAATAATTATTCTCTAGGTTGGCATAAACTTCAAGATATTGTTGTTGGCATAGCTAAAGGTATTGAGTATCTTCACCAAGGTTGTGATCAAAGAATCCTTCATTTGGATATCAAACCTCATAATATTTTGCTTGATCATAACTTTAATCCGAAGATTTCTGATTTTGGTTTAGCCAAATTATGCTCTAAGGAGCAAAGTGCAGTATCTATGACAGCAGCAAGAGGGACCATGGGTTATATTGCACCAGAAATGTTATCAAGAAATTTTGGGAATGTGTCTTCTAAGTCAGATGTTTATAGTTTTGGTATGTTGTTGATTGAAATGGTAGGGGGAAGGAAGAATATTGATGCTACAGTAGAAAATACTAGTCAAGCATACTTCCCAGAATGGCTCTATAATCATTTGGATCAAGAGCAAGAGGTACACATCCGAATTGAGGACGAAAGTGATATTAAAATAGCAAAGAAACTAAGCATCATAGGGCTTTGGTGTATCCAATGGTATCCAATAGATCGTCCTTCCATGAAAATTGTGGTTGGAATGTTGGAAGGAGAAGAAGGCAATTTAGTTATGCCTCCTAATCCTTTTACCTCTATGGGACAAACAAGGACAAGTGTTAGAAGACGTAAAACATCTATCCAACCAGAGTTGACAATCATATCAGAAATAGAATAA 2070 0.3797 MRLFAEINGGSQDDECKASRCSHHGPVIRFPFRLKHQPEHCGYPEFELSCSEEKRTILELPSSVILWVKEINYTSQEIFVQYPDDCLPRQILNLNLPASFFTYYTNDFSFFNCSESKAEIYELRSIPCSFLSSNPVYVAPSYYTLAGVNLSSCRKIFNATLPFFYINEGEFWMKWLKPMCGNCEAKGNKCQRKKNNSREPEINCSEDITNQLSYADNQLWSIPYSILSSNPVYVAPSSYSLAEVNLSSCQKIFNATLPDNYMFDHEREFYMNWSKPMCGNCEAKGNKCQRKKNNSTEPEIECIDKPAKGAPMDKMVLTEAILGFLHFTFGIFIIFIVYRSNKLKREHRVNIQKFLEDYRALKPSRYSYADIKKITNNFKDKLGQGGYGTVYKGKLSNEVFVAVKILDDFKGNGEDFINEVGTMSTIHHVNVVRLLGFCADGYKRALIYEFLPNESLDKFIFSAFGNNYSLGWHKLQDIVVGIAKGIEYLHQGCDQRILHLDIKPHNILLDHNFNPKISDFGLAKLCSKEQSAVSMTAARGTMGYIAPEMLSRNFGNVSSKSDVYSFGMLLIEMVGGRKNIDATVENTSQAYFPEWLYNHLDQEQEVHIRIEDESDIKIAKKLSIIGLWCIQWYPIDRPSMKIVVGMLEGEEGNLVMPPNPFTSMGQTRTSVRRRKTSIQPELTIISEIE* 690
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g1149 689 Pfam Protein kinase domain 379 642 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi16g1149 689 FunFam PR5-like receptor kinase 451 658 - -
Vvi16g1149 689 ProSitePatterns Protein kinases ATP-binding region signature. 382 404 IPR017441 GO:0005524
Vvi16g1149 689 FunFam serine/threonine-protein kinase PBS1-like 344 450 - -
Vvi16g1149 689 Pfam Wall-associated receptor kinase galacturonan-binding 16 80 IPR025287 GO:0030247
Vvi16g1149 689 ProSiteProfiles Protein kinase domain profile. 376 662 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi16g1149 689 Gene3D Transferase(Phosphotransferase) domain 1 451 654 - -
Vvi16g1149 689 SUPERFAMILY Protein kinase-like (PK-like) 360 648 IPR011009 -
Vvi16g1149 689 PANTHER RUST RESISTANCE KINASE LR10-RELATED 345 666 IPR045874 GO:0004672
Vvi16g1149 689 ProSitePatterns Serine/Threonine protein kinases active-site signature. 497 509 IPR008271 GO:0004672|GO:0006468
Vvi16g1149 689 Gene3D Phosphorylase Kinase; domain 1 350 450 - -
Vvi16g1149 689 SMART serkin_6 376 647 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g1149 Vvi-Chr16 20038651 20041227 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g1149 344 660 Receptor kinase-like Gene Family AT1G66980 54.630 3.09e-107 348
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Vvi16g1149 Pkinase 3.4e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g1149 - - vvi:100853763 951.429