Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g1145 ATGATAAACCTTCATGGTGGGACATACTTAGTTACCCAGATCAACTACCAGAATTATACAATTCGGGTAGTGGATCCTCGGCGAAAGAAGGACAACTGTTGGATCTCCAGTCCTCTTAATTCCATTGGTGCATATTACAAAGAAAATCCATATGATTCGTCTTCTGCATGGAGTGCTGGTTATACTCTGCCTTATAAATGGAATCCTGCTTCTCCTTATCCTTCTGAACCAATATTCTATACAATAGTTTTGATGAACTGTGAGCAGTCAATCAGGGACGACAACTACCTTCATATAATTCCATGCAACACTAGAGGCTCTTCCTCTTCCTCACCAACATACGCTTATGCAGTTGTCGGAGACTATGTGTCGGTGGGAGATATTCCGTATTCATGCACCATCGGCACATCTATTATTATTCAACCGTTGAAGTCACTTCCAGAGCCCAGCAATCTTTCGATGTCAGATTTGCAAAATTATATGCTTCTGGGGCTTCAGCTTTCATTTTTGCCTCTCTTCTGCCACCGCCAATGCGAAATGATAGGGCAAGATTGCTACGATATAAATTTCACTGGGAACGTCGGCTTTGAATGCAAGTCATGGGCCGACCTTACTGGCAACACTCCAGAGAAAAATGGCTGTGACATGCAAATTCTACATTTTGATATCAAGCCACACAATATTCTTCTTGATGAAGACTTTACACCAAAAGTTTCAGATTTTGGCCTTGCAAAATTGTATTCAACAGATGAAAGTATGGTGTCTCTCACTGCTGCACGAGGAACATTGGGATATATTGCTCCAGAATTGTTCTATAAAAATATTGGAGGTGTCTCATACAAAGCTGATGTTTATAGTTTTGGAATGTTGTTAATGGAGATGGTGGGGAGAAGAAAGAATGTGAATGCAAATGCAGCGCACTCGAGTCAAATATATTTTCCATCATGGATTTATGATAGATATGATCAAGGAGATAACATAGACTTGGGAGATGCCACTGAAGATGAAAAGAAGCTTGTTAGGAAAATGGTGATAGTTGCACTATGGTGTATACAGATGAAGCCCATAGATCGTCCTTCAATGAGCAAAGCTTTAGAGATGTTGGAAGGAGAGGTTGAGCTATTAGAAATGCCTCCGAAGCCTACTCTATACTCTGAGGAAATGTTAGTTGAGGATCATATGAGCAATCCAATAGAAGCACCAATTTCCTTGTGCAATTCCATGGGTACAATTACATTAGATGGAAGGTAG 1251 0.4045 MINLHGGTYLVTQINYQNYTIRVVDPRRKKDNCWISSPLNSIGAYYKENPYDSSSAWSAGYTLPYKWNPASPYPSEPIFYTIVLMNCEQSIRDDNYLHIIPCNTRGSSSSSPTYAYAVVGDYVSVGDIPYSCTIGTSIIIQPLKSLPEPSNLSMSDLQNYMLLGLQLSFLPLFCHRQCEMIGQDCYDINFTGNVGFECKSWADLTGNTPEKNGCDMQILHFDIKPHNILLDEDFTPKVSDFGLAKLYSTDESMVSLTAARGTLGYIAPELFYKNIGGVSYKADVYSFGMLLMEMVGRRKNVNANAAHSSQIYFPSWIYDRYDQGDNIDLGDATEDEKKLVRKMVIVALWCIQMKPIDRPSMSKALEMLEGEVELLEMPPKPTLYSEEMLVEDHMSNPIEAPISLCNSMGTITLDGR* 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g1145 416 ProSiteProfiles Protein kinase domain profile. 1 375 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi16g1145 416 SMART serkin_6 137 368 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi16g1145 416 Gene3D Transferase(Phosphotransferase) domain 1 210 386 - -
Vvi16g1145 416 PANTHER RUST RESISTANCE KINASE LR10-RELATED 212 387 IPR045874 GO:0004672
Vvi16g1145 416 Pfam Protein kinase domain 216 366 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi16g1145 416 SUPERFAMILY Protein kinase-like (PK-like) 214 369 IPR011009 -
Vvi16g1145 416 ProSitePatterns Serine/Threonine protein kinases active-site signature. 218 230 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g1145 Vvi-Chr16 20009430 20012532 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g1145 212 396 Receptor kinase-like Gene Family AT5G38280 50.265 7.78e-61 207
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Vvi16g1145 Pkinase 4.7e-22 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g1145 - - vvi:100853806 450.669