Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g1144 ATGAGATTGTTTGCAGAGATTAATGGAGGAAGCCGAGATGATGAGTGCAAGGCGTCAAGGTGCAGTCACCATGGTCCAGTCATCCGGTTTCCGTTCCGGCTAAAACACCAGCCAGAACACTGTGGATATCCGGAGTTTGAGCTATCATGCTCAGAAGAGAAGCGGACCATACTAGAGCTGCCCTCTTCAGGAAAGCTCTGGGTGAAGGAAATAAATTACACTTCTCAGGAGATTGTTCTCTGGTACCCGCGTGATTACCTTCAATGGCAGATTCTAAACTTTAATTTATCTGCCTTTCCCTTCCAGTTCAAAGATGAGTACACATACAGCAACTTCTCCTTCTTCAATTGTTCTGAAGATATAACAAATCAGCTATCATATGCTGATAATCAACTTTGGTCCATCCCTTGCAGTATTCTCTCAAGTAACCCAGTTTATGTCGCTCCTTCCTCTTACTCTCTCGCTGAAGTGAACTTATCCTCTTGCCGGAAGATTTTCAATGCTACACTCCCAGAATATTATACATATAATTATATGGTTTATCATGAAAGGGAATTTTATATGAATTGGTCAAAACCTATGTGCGGAAACTGTGAAGCAAAAGGAAACAAGTGCCAACGGAAGAAGAATAATAGCAGGGAACCTGAAATCGAATGCATTGATAAACCAGCAAAAGGTGCTCCAATGGATAAAATGGTGCTTACAGAAGCAATCCTTGGTTTCCTTCATTTCACTTTTGGAATCTTTATAATATTTATTGTCTATCGCTCTAATAAGTTGAAAAGAGAGCATAGAATAAATATTCAAAAGTTTTTGGAAGATTATAGAGCTCTGAAGCCCTCAAGGTACTCCTATGCTGATATTAAAAAGATCACAAATAATTTCAAGGACAAACTAGGTCAAGGAGGCTATGGGACCGTTTATAAAGGAAAGCTCTCAAATGAAGTTTTTGTTGCTGTAAAGATCCTTGATGGTTTCAAAGGAAATGGAGAAGAGTTCATTAATGAAGTAGGAACAATGAGTACCATACATCATGTTAACGTGGTTCGGTTGCTCGGGTTTTGTGCAGATGGATATAAGCGAGCTTTGATTTATGAATTTTTACCAAATGAGTCACTAGACAAGTTTATATTTTCAGCATTTGGTAATAATTATTCTCTGGGTTGGCATAAGCTTCAAGAAATTGCTATTGGCATAGCTAAAGGTATTGAGTATCTTCACCAAGGTTGTGATCAAAGAATCCTTCATTTGGATATCAAACCTCATAATATTTTGCTTGATCATAACTCTAATCCGAAGATTTCTGATTTTGGTTTAGCCAAATTATGCTCTAAGGAGCAAAGTGCAGTATCTATGACAGCAGCAAGGGGAACCATGGGTTATATTGCACCAGAAATGTTATCAAGAAATTTTGGGAATGTATCTTATAAGTCAGATGTTTATAGTTTTGGTATGTTGTTGATCGAAATGGTAGGGGGAAGGAAGAATATTGATGCTACAGTAGAAAATACTAGTCAAGCATACTTCCCAGAATGGCTCTACAATCATTTGGATCAAGAGCAAGAGGTACACATCCGAATTGAGGATGAAAGTGATATTAAAATAGCAAAGAAACTAAGCATCATAGGGCTTTGGTGTATCCAATGGTATCCAATAGATCGTCCTTCCATGAAAATTGTGATTGGAATGTTGGAAAGAGAAGGAGGCAATTTAGTTATGCCTCCTAATCCTTTTACCTCCATGGGACAAACAAGGACAAGTGTTAGAAGACGCATAACATCTATCCAACCAGAGTTGACAGTCATAACAGAAATAGAATAA 1821 0.3806 MRLFAEINGGSRDDECKASRCSHHGPVIRFPFRLKHQPEHCGYPEFELSCSEEKRTILELPSSGKLWVKEINYTSQEIVLWYPRDYLQWQILNFNLSAFPFQFKDEYTYSNFSFFNCSEDITNQLSYADNQLWSIPCSILSSNPVYVAPSSYSLAEVNLSSCRKIFNATLPEYYTYNYMVYHEREFYMNWSKPMCGNCEAKGNKCQRKKNNSREPEIECIDKPAKGAPMDKMVLTEAILGFLHFTFGIFIIFIVYRSNKLKREHRINIQKFLEDYRALKPSRYSYADIKKITNNFKDKLGQGGYGTVYKGKLSNEVFVAVKILDGFKGNGEEFINEVGTMSTIHHVNVVRLLGFCADGYKRALIYEFLPNESLDKFIFSAFGNNYSLGWHKLQEIAIGIAKGIEYLHQGCDQRILHLDIKPHNILLDHNSNPKISDFGLAKLCSKEQSAVSMTAARGTMGYIAPEMLSRNFGNVSYKSDVYSFGMLLIEMVGGRKNIDATVENTSQAYFPEWLYNHLDQEQEVHIRIEDESDIKIAKKLSIIGLWCIQWYPIDRPSMKIVIGMLEREGGNLVMPPNPFTSMGQTRTSVRRRITSIQPELTVITEIE* 607
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g1144 606 Pfam Wall-associated receptor kinase galacturonan-binding 16 80 IPR025287 GO:0030247
Vvi16g1144 606 Pfam Protein kinase domain 296 558 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi16g1144 606 ProSiteProfiles Protein kinase domain profile. 293 579 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi16g1144 606 ProSitePatterns Serine/Threonine protein kinases active-site signature. 414 426 IPR008271 GO:0004672|GO:0006468
Vvi16g1144 606 SUPERFAMILY Protein kinase-like (PK-like) 277 564 IPR011009 -
Vvi16g1144 606 FunFam serine/threonine-protein kinase PBS1-like 261 367 - -
Vvi16g1144 606 ProSitePatterns Protein kinases ATP-binding region signature. 299 321 IPR017441 GO:0005524
Vvi16g1144 606 FunFam PR5-like receptor kinase 368 575 - -
Vvi16g1144 606 Gene3D Transferase(Phosphotransferase) domain 1 368 570 - -
Vvi16g1144 606 Gene3D Phosphorylase Kinase; domain 1 267 367 - -
Vvi16g1144 606 PANTHER RUST RESISTANCE KINASE LR10-RELATED 262 582 IPR045874 GO:0004672
Vvi16g1144 606 SMART serkin_6 293 564 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g1144 Vvi-Chr16 20006268 20008592 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g1144 30 605 Receptor kinase-like Gene Family AT1G66910 35.783 7.32e-108 337
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Vvi16g1144 Pkinase 3.1e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g1144 - - vvi:100853763 1245.72