Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g1142 ATGGATCGATATCTCTGTTTGTTTTTGTTCTTGTTCCTGACCTTGTTTGTGGAGATGAGAGGGGGCCGAGATGAGTGCATGACATCGAATGGTTGTGGCGACCAGGGTCCACTCATCCGGTTCCCTTTCCGTCTAAAACACCAGCCACACCACTGTGGATATCCGGGATTTGAGTTATCTTGCACTGAGAATAATCAGACCATGCTAGACCTGCCAGTTTCGGTAAAGCTCTTGGTGAAGAAAATAGTTTACAAATCCCGGGAAATCATTGTCCAGGACCCGGATAATTGCCTTGCGAGACAGCTTCGAAACCTCAATTTAGCTGCCTCCCCCTTCCACTTCAAATTTGAACGGGACTTCATCTTGTTCAATTGTTCCTCAGACAAAACAGAATCATCTCGTTTTCAGTCCATCCCTTGCCTTTCTATCCCTGGTAACCCAGTTTATGCTGTTTATTCCTACCTATCTGTCCAATATACGGATCTATCCTCTTGCCGCAGGCTTTACAACGCTTCAGCTCCTGAGGATTTTATGTTCATTGAAAGTGCATTTTCTTTGAAGTGGTCGAAATCAATATGTGGAAGCTGCCCAGGAGGAGGAAAAATATGCAGACTGAAGAAGAGTAATAGCACGGAACCAGAAACTGAATGTATTAAAGTTAAAGGTGTATCGAAGAAAATAATTGTGACAGGTGCAATCTTTGGTTTTTTTCTTCTCGTGTTAGTGATTGTTATGCTTTATCGTGTCTATAGCTCAGATAAAGTAGAAAGAGAGAATAGAGTAAAGGTTAAAAAGTTTCTAGAAGACTATGAAGCTCTCAAGCCCTCAAGATACTCCTATGTTGATGTTAAAAGGATCACAAGTCAATTCAAAGATAAATTAGGCCAAGGAGGATATGGAACTGTGTACAAAGGAAAGCTTTCAGATGAAGTTTTTGTTGCAGTAAAAATCCTTAACAATTCTCAAGGAAATGGGGAAGAGTTCATTAATGAAGTGGCAACAATGGGTACAATCCACCATGTTAATATAGTTCGTTTAGTTGGATTTTGTGCTGATAGATTTAAACGAGCTCTAATTTATGAGTACTTACCAAATGAGTCATTGGAGAAGTTCATATTTTCAAGAGTTGTCAAGAACTATACACTTAGTTGGAAGAAACTTCAAGAAATTGCTATAGGTATAGCAAAAGGAATTGAGTATCTTCATCAAGGTTGTGATAAAAGAATCCTTCATTTTGATATCAAACCTCATAATATTTTACTTGACCACAACTTTAATCCAAAGATTTCTGACTTTGGTTTAGCCAAATTGTGCTCCAAGGAACAAAGTGCAGTCTCTATGACAATTGTAAGGGGAACAATGGGTTATATCGCTCCAGAAGTGTTATCTAGGAATTTTGGGAATGTATCTTATAAGTCAGATGTTTATAGTTTTGGAATGTTATTACTTGAAATGGTTGGAGGAAGGAAGAACATTGATGTTAGTGTGGAGAGTACTAGCCAAGTATACTTCCCAGAATGGATTTATAATCATTTGGATATAGGGGAAGAATTGCATATTCGAATTGAAGAAGAAGGAGATGTTGAGATTGCAAAGAAATTAGCAATTGTGGGACTTTCATGTATTCAGTGGTGTCCAGTGGATCGTCCTTCCATGAAAATTGTAGTTCAAATGTTGGAAGGAGAAGGAGACAAGTTAACCATGCCTCCTAACCCTTTTGCTTCAACAATTCCAACAAACTTGAGCAAGCCAGGAAGAGTTTTTCAACAAGAGTTGGCAATAATTTCAGAACTAGAGTAA 1800 0.3856 MDRYLCLFLFLFLTLFVEMRGGRDECMTSNGCGDQGPLIRFPFRLKHQPHHCGYPGFELSCTENNQTMLDLPVSVKLLVKKIVYKSREIIVQDPDNCLARQLRNLNLAASPFHFKFERDFILFNCSSDKTESSRFQSIPCLSIPGNPVYAVYSYLSVQYTDLSSCRRLYNASAPEDFMFIESAFSLKWSKSICGSCPGGGKICRLKKSNSTEPETECIKVKGVSKKIIVTGAIFGFFLLVLVIVMLYRVYSSDKVERENRVKVKKFLEDYEALKPSRYSYVDVKRITSQFKDKLGQGGYGTVYKGKLSDEVFVAVKILNNSQGNGEEFINEVATMGTIHHVNIVRLVGFCADRFKRALIYEYLPNESLEKFIFSRVVKNYTLSWKKLQEIAIGIAKGIEYLHQGCDKRILHFDIKPHNILLDHNFNPKISDFGLAKLCSKEQSAVSMTIVRGTMGYIAPEVLSRNFGNVSYKSDVYSFGMLLLEMVGGRKNIDVSVESTSQVYFPEWIYNHLDIGEELHIRIEEEGDVEIAKKLAIVGLSCIQWCPVDRPSMKIVVQMLEGEGDKLTMPPNPFASTIPTNLSKPGRVFQQELAIISELE* 600
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g1142 599 ProSitePatterns Protein kinases ATP-binding region signature. 294 316 IPR017441 GO:0005524
Vvi16g1142 599 FunFam serine/threonine-protein kinase PBS1-like 255 362 - -
Vvi16g1142 599 CDD STKc_IRAK 294 561 - -
Vvi16g1142 599 Gene3D Transferase(Phosphotransferase) domain 1 363 567 - -
Vvi16g1142 599 SUPERFAMILY Protein kinase-like (PK-like) 273 560 IPR011009 -
Vvi16g1142 599 Pfam Protein kinase domain 290 557 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi16g1142 599 SMART serkin_6 288 559 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi16g1142 599 Gene3D Phosphorylase Kinase; domain 1 257 362 - -
Vvi16g1142 599 ProSiteProfiles Protein kinase domain profile. 288 574 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi16g1142 599 PANTHER RUST RESISTANCE KINASE LR10-RELATED 260 576 IPR045874 GO:0004672
Vvi16g1142 599 Pfam Wall-associated receptor kinase galacturonan-binding 30 93 IPR025287 GO:0030247
Vvi16g1142 599 FunFam PR5-like receptor kinase 363 570 - -
Vvi16g1142 599 ProSitePatterns Serine/Threonine protein kinases active-site signature. 409 421 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g1142 Vvi-Chr16 19987313 19990464 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g1142 4 598 Receptor kinase-like Gene Family AT1G66910 36.515 1.02e-117 362
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Vvi16g1142 Pkinase 9.2e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g1142 - - vvi:100251011 1176.39