Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g1141 ATGGATCGATATCTCTGTTTGTTTTTGTTCTTGTTTCTAACCTTGTTTGTGGAGATGAGAGGGGGCCGAGATGAGTGCATGACATCGAATGGTTGTGGCGACCAGGGTCCACTCATCCGGTTCCCTTTCCATCTAAAACACCAGCCACACCACTGTGGATATCCGGGATTTGAGTTATCTTGCACTGAGAATAATCAGACCATGCTAGACCTGCCAGTTTCGGTAAAGCTCTTGGTGAAGAAAATAGTTTACAAATCCCGGGAAATCATTGTCCAGGACCCGGATAATTGCCTTGCGAGACAGCTTCGAAACCTCAATTTAGCTGCCTCCCCCTTCCACTTCAAATTTGAACGGGACTTCATCTTGTTCAATTGTTCCTCAGATAAAACAGAATCATCTCGTTTTCAGTCCATCCCTTGCCTTTCTATCCCTGGTAACCCAGTTTATGCTGTTTCTTCCTCCAGATATGTCCAATATACGGATCTATCCTCTTGCCGCAGGCTTTACAACGCTTCAGCTCCAGGTAATCGAGATTATGGGGATTATATGTTCAATGGAAGTGCATTTTCTTTGAAGTGGTCGAAATCAATATGTGGAAGCTGCCCAGAAGGAGGAAAAATATGCAGACTGAAGAAGAGTAATAGCAGGGAACCAGAAACTGAATGTATTAAAGGTGTATCGAAGAAATTAATTGTGACAGGTGCAATCTTTGGTTTCTTTCTTCTCATGTTAGTAATTGTTGTGGCTTATCGAGTCTATAGCTCAAATAAAGTAGAAAGAGATAATAGAGTAAAGGTTAAAAAGTTTCTAGAAGACTATGAAACTCTCAAGCCCTCAAGATACTCCTATGCTGATATTAAAAGGATTACGAGTCAATTCAAAGATAAATTAGGGGAAGGAGGATATGGAACAGTGTACAAAGGAAAGCTTTCAGATGAAGTTTTTGTTGCAGTAAAAATCCTTAACAATTCTCAAGGAAATGGGGAAGAGTTCATTAATGAAGTAGCAACAATGGGTACAATCCACCATGTTAATATAGTTCGTTTAGTTGGATTTTGTGCTGATAGATTTGAACGAGCTCTAATTTATGAGTACTTACCAAATGAGTCATTGGAGAAGTTCATATTTTCAAAAGTTGTCAAGAACTATTCACTTAATTGGAAGAAACTTCAAGAAATTGCTATAGGTATAGCAAAAGGAATTGAGTATCTTCATCAAGGTTGTGACCAAAGAATCCTTCATTTTGATATCAAACCTCATAATATTTTACTTGACCACAACTTTAATCCAAAGATTTCTGACTTTGGTTTAGCCAAATTGTGCTCCAAGGAACAAAGTGCAGTCTCTATGACAATTGTAAGGGGAACAATGGGCTATATCGCTCCAGAAGTGTTATCTAGGAATTTTGGGAATGTGTCTTATAAGTCAGATGTTTATAGTTTTGGAATGTTGTTACTTGAAATGGTTGGAGGAAGGAAGAACATTGATGTTAGTGTAGAGAGTACTAGCCAAGTATATTTCCCAGAATGGATTTATAATCATTTGGATATAGGGGAAGAATTGCATATTCGAATTAAAGAAGAAGGAGATGTTGAGATTGCAAAGAAATTAGCAATTGTGGGACTTTCATGTATTCAGTGGTGTCCAGTGGATCGTCCTTCCATGAAAATTGTGGTTCAAATGTTGGAAGGAGAAGGAGACAAGTTAACCATGCCTCCTAACCCTTTTGCTTCAACAGTTCCAACAAACTTGAGCAAGCCAGGTAGAGTTTTTCAACAAGAGTTGGCAATAATTTCAGAACTAGAGTAA 1809 0.3847 MDRYLCLFLFLFLTLFVEMRGGRDECMTSNGCGDQGPLIRFPFHLKHQPHHCGYPGFELSCTENNQTMLDLPVSVKLLVKKIVYKSREIIVQDPDNCLARQLRNLNLAASPFHFKFERDFILFNCSSDKTESSRFQSIPCLSIPGNPVYAVSSSRYVQYTDLSSCRRLYNASAPGNRDYGDYMFNGSAFSLKWSKSICGSCPEGGKICRLKKSNSREPETECIKGVSKKLIVTGAIFGFFLLMLVIVVAYRVYSSNKVERDNRVKVKKFLEDYETLKPSRYSYADIKRITSQFKDKLGEGGYGTVYKGKLSDEVFVAVKILNNSQGNGEEFINEVATMGTIHHVNIVRLVGFCADRFERALIYEYLPNESLEKFIFSKVVKNYSLNWKKLQEIAIGIAKGIEYLHQGCDQRILHFDIKPHNILLDHNFNPKISDFGLAKLCSKEQSAVSMTIVRGTMGYIAPEVLSRNFGNVSYKSDVYSFGMLLLEMVGGRKNIDVSVESTSQVYFPEWIYNHLDIGEELHIRIKEEGDVEIAKKLAIVGLSCIQWCPVDRPSMKIVVQMLEGEGDKLTMPPNPFASTVPTNLSKPGRVFQQELAIISELE* 603
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g1141 602 PANTHER RUST RESISTANCE KINASE LR10-RELATED 263 579 IPR045874 GO:0004672
Vvi16g1141 602 ProSitePatterns Protein kinases ATP-binding region signature. 297 319 IPR017441 GO:0005524
Vvi16g1141 602 FunFam PR5-like receptor kinase 366 573 - -
Vvi16g1141 602 Pfam Wall-associated receptor kinase galacturonan-binding 30 93 IPR025287 GO:0030247
Vvi16g1141 602 Gene3D Phosphorylase Kinase; domain 1 260 365 - -
Vvi16g1141 602 ProSiteProfiles Protein kinase domain profile. 291 577 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi16g1141 602 Gene3D Transferase(Phosphotransferase) domain 1 366 571 - -
Vvi16g1141 602 FunFam serine/threonine-protein kinase PBS1-like 258 365 - -
Vvi16g1141 602 Pfam Protein kinase domain 293 560 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi16g1141 602 ProSitePatterns Serine/Threonine protein kinases active-site signature. 412 424 IPR008271 GO:0004672|GO:0006468
Vvi16g1141 602 SMART serkin_6 291 562 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi16g1141 602 SUPERFAMILY Protein kinase-like (PK-like) 274 563 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g1141 Vvi-Chr16 19911009 19914631 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g1141 4 601 Receptor kinase-like Gene Family AT1G66910 36.778 1.30e-118 365
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Vvi16g1141 Pkinase 1.6e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g1141 - - vvi:100242248 1181.39