Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g1139 ATGAGATTGTTTGCAGAGATTAATGGAGGGAGCCAAGATGATGAGTGCAAGGCGTCAAGGTGCAGTCACCATGGTCCAGTCATCCGGTTTCCGTTCAGGCTAAAACACCAGCCAGAACACTGTGGATGTCCGGAGTTTGAGTTATCATGCTCAGAAGAGAACCGGACCATACTAGAGCTGCCCTCTTCAGGAAAGCTCTGGGTGGAGGAAATAAATTACGCTTCTCAGGAGATTGTTGTCCATTACTCGGATGATTGCCTTCAAAGGCAGACTCCAAACTTTAATTTATCTGCCTCTCCCTTCCAGTTCACAAATGTGTACCGCAACTTCTCCTTCTTCAATTGTTCAGAAAGTAAAGAAGAGTCATTTGTGTTTAGGTCCATCCCTTGCAGTTTTCTCTCAAGTAACCCAGTTTATGTTGCTCCTTCCTATTACGCTCTTGCTGGAGTGAACTTATCCTCTTGCCGGAAGATTTTCAATGCTACACTCCCACAAAATTATATATATGAATGGGATTTTTCTATGAATTGGTCAAAACCTATGTGCGGAAACTGTGAAGCAAAAGGAAACAAGTGCCAACGGAAGAAGAATAATAGCACGGAACCTGAAATCAAATGCATTGATAAACCAGCAAAAGAAGTAATCCTTGGTTTCCTTCATTTCACTTTTGGAATCTTTATAATCTTTATTGTCTATCGCTCTAATAAGTTGAAAAGAGAGCATAGAATAAATATTCAAAAGTTTTTGGAAGATTATAGAGCTCTCAAGCCCTCAAGGTACTCCTATGCTGATATTAAAAAGATCACAAATAATTTCAAGGACAAACTAGGTCAAGGAGGCTACGGGACCGTTTATAAAGGAAAACTCTCGAATGAAATTTTTGTTGCAGTGAAGATCCTTGATGATTTCAAAGGGAATGGAGAAGAGTTCATTAATGAAGTGAGAACAATGGGTACGATACATCATGTTAATGTGGTTCGCTTGCTTGGGTTTTGTGCAGATGGATATAAGCAAGCTTTGATTTGTGAATTTTTACCAAATGAGTCACTAGACAAGTTCATATTTTCAGCATTTGGTAATAATTATTCTTTGGGTTGGCATAAGCTTCAAGATATTGCTATTGGCATAGCTAAAGGTATTGAGTATCTTCATCAAGGTTGTGATCAAAGAATCCTTCATTTGGATATCAAACCTCATAATATTTTGCTTGATCATAACTTTAATCCGAAGATTTCTGATTTTGGTTTAGCCAAATTATGCTCTAAGGAGCAAAGTTTAGTATCTATGACAGCAGCAAGGGGGACCATGGGTTATATTGCACCAGAAATGTTTTCAAGAAATTATGGGAATGTGTCTTATAAGGCAGATGTTTACAGTTTTGGTATGTTGTTGATTGAAATGGTAGGGGGAAGGAAGAATATTGATGCTACAGTAGAAAATACAAGTCAAGCATACTTCCCAGAATGGCTTTATAATCATTTGGATCAAGAGCAAGAGGTACACATCCGAATTGAGGAAGAAAGTGATATTAAAATAGCAAAGAAACTAAGCATCATAGGGCTTTGGTGTATCCAATGGTATCCAATAGATCGTCCTTCCATGAAAATTGTGGTTGGAATGTTGGAAGGAGAAGAAGGCAATTTAGTTATGCCTCCTAATCCTTTTACCTCTATGGGACAAACAAGGACAAGTGTTAGAAGACGCAAAACATCTATCCAACCAAAGTTGACAGCCATATCAGAAATAGAATAA 1752 0.3818 MRLFAEINGGSQDDECKASRCSHHGPVIRFPFRLKHQPEHCGCPEFELSCSEENRTILELPSSGKLWVEEINYASQEIVVHYSDDCLQRQTPNFNLSASPFQFTNVYRNFSFFNCSESKEESFVFRSIPCSFLSSNPVYVAPSYYALAGVNLSSCRKIFNATLPQNYIYEWDFSMNWSKPMCGNCEAKGNKCQRKKNNSTEPEIKCIDKPAKEVILGFLHFTFGIFIIFIVYRSNKLKREHRINIQKFLEDYRALKPSRYSYADIKKITNNFKDKLGQGGYGTVYKGKLSNEIFVAVKILDDFKGNGEEFINEVRTMGTIHHVNVVRLLGFCADGYKQALICEFLPNESLDKFIFSAFGNNYSLGWHKLQDIAIGIAKGIEYLHQGCDQRILHLDIKPHNILLDHNFNPKISDFGLAKLCSKEQSLVSMTAARGTMGYIAPEMFSRNYGNVSYKADVYSFGMLLIEMVGGRKNIDATVENTSQAYFPEWLYNHLDQEQEVHIRIEEESDIKIAKKLSIIGLWCIQWYPIDRPSMKIVVGMLEGEEGNLVMPPNPFTSMGQTRTSVRRRKTSIQPKLTAISEIE* 584
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g1139 583 SMART serkin_6 270 541 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi16g1139 583 ProSiteProfiles Protein kinase domain profile. 270 556 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi16g1139 583 Pfam Wall-associated receptor kinase galacturonan-binding 16 80 IPR025287 GO:0030247
Vvi16g1139 583 SUPERFAMILY Protein kinase-like (PK-like) 254 542 IPR011009 -
Vvi16g1139 583 Gene3D Phosphorylase Kinase; domain 1 231 344 - -
Vvi16g1139 583 ProSitePatterns Protein kinases ATP-binding region signature. 276 298 IPR017441 GO:0005524
Vvi16g1139 583 MobiDBLite consensus disorder prediction 553 570 - -
Vvi16g1139 583 FunFam S-receptor-like serine/threonine-protein kinase 238 344 - -
Vvi16g1139 583 Pfam Protein kinase domain 273 536 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi16g1139 583 Gene3D Transferase(Phosphotransferase) domain 1 345 548 - -
Vvi16g1139 583 ProSitePatterns Serine/Threonine protein kinases active-site signature. 391 403 IPR008271 GO:0004672|GO:0006468
Vvi16g1139 583 MobiDBLite consensus disorder prediction 551 570 - -
Vvi16g1139 583 PANTHER RUST RESISTANCE KINASE LR10-RELATED 239 560 IPR045874 GO:0004672
Vvi16g1139 583 FunFam PR5-like receptor kinase 345 552 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g1139 Vvi-Chr16 19868143 19870427 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g1139 30 582 Receptor kinase-like Gene Family AT1G66910 35.275 1.34e-108 338
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Vvi16g1139 Pkinase 1.6e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g1139 - - vvi:100251517 1197.19