Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g1133 ATGAGAGGGGGGCGAGGTGAGTGCCCGACATCAAATCGTTGTGGCGTCCAGGGTCCACTCATCCAGTTCCCTTTCCGTCTAAAAAGCCAGCCACACCACTGTGGATACCCGGGATTTGTTTTATCTTGCACTGAGAATAATCAGATCATGCTGGAGCTGCCAGATTCGGTAAAGCTCTTGGTGAAGAATATAATCTACGAATCCAGGGAAATCATTGTCCAGAACCCGGATAATTGCCTTGAGAGACAGCTTCGAAACCTTAGTTTAGCTTCGTCCCCCTTCCAGTTCAAATTTGAGGGGGACGTCACCTTCTTCAATTGTTCCTTACTTAAAACGGCAGAATCATTTGCTGCTCACTTCATCCCTTGCCTTTCTATCCCTGGTAACCCAGTTTATGCCGTTGATTCCTTCTATCCCCTCCAAAATATGGACCTATCGTCTTGCCGCAGGCTTTACAACGCTTCAGTTGGATATCATGTCTTTACGGATTATAAATTCAATGGAAGTGCGTTTTCTTTGAAGTGGCCGAAATCAATATGTGGAAGCTGCCTACGAGGACACATATGCAGACTGAAGAAGAGTAATAGCAAGGAACCAGAAACTGAATGTATTAAAGGTGTATCAAAGCAAGCAATGGTAACAGGCACAATCTTTGGTTTCTTTCTACTTGTGTTAGTAATTGCTATGTTTTATCGTCTCTATAGCTCAGATAAATTAGAAAGAGAGAATGGAATAAAGGTTAAAAGGTTTCTGGAAGACTATGAAGCTCTCAAGCCCTCAAGATACTCCTATGCTGATATTAAAAGGATTACAAATCAATTCAAAGATAAATTAGGCCAAGGAGGTTATGGAACCGTGTACAAGGGAAAGCTTTCACATTAA 882 0.4229 MRGGRGECPTSNRCGVQGPLIQFPFRLKSQPHHCGYPGFVLSCTENNQIMLELPDSVKLLVKNIIYESREIIVQNPDNCLERQLRNLSLASSPFQFKFEGDVTFFNCSLLKTAESFAAHFIPCLSIPGNPVYAVDSFYPLQNMDLSSCRRLYNASVGYHVFTDYKFNGSAFSLKWPKSICGSCLRGHICRLKKSNSKEPETECIKGVSKQAMVTGTIFGFFLLVLVIAMFYRLYSSDKLERENGIKVKRFLEDYEALKPSRYSYADIKRITNQFKDKLGQGGYGTVYKGKLSH* 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g1133 293 Pfam Wall-associated receptor kinase galacturonan-binding 8 73 IPR025287 GO:0030247
Vvi16g1133 293 Gene3D Phosphorylase Kinase; domain 1 244 293 - -
Vvi16g1133 293 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 7 238 IPR046948 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g1133 Vvi-Chr16 19778217 19780647 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g1133 14 226 C3H Transcription Factor Family AT2G25410 33.186 8.89e-20 86.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g1133 - - vvi:100854328 592.808