Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g1132 ATGCTCAGAGAAGCAAAAGTTGTGGCATTAACAGTCTTGCACACTTTCTTGCTTGCAATTTGTGCTGCTAATGGAAACCAGACATGCAGGCCTTCTTCTTGTGGAGATATTAAAAAAATCAGCAACCCTTTCCGATTGAAAGGTGATCCGTCTGGGTGTGGTGATCCTGACTATGAATTGGTCTGCGAAAATAATCGTACTATGGTAAACCTGGAGCATGGGAAATACTATGTTGCCGATATCAACTACGTTAACTACACCATTCGGGTAGTGGATCCTGGGGTGGAAAAGGGCAACTGTTTCTCCGCTCCTCTGTATTCCTTGACAAGAGAAATATTCCGTTCGGATAAGAGAGCATATTTTTTGAATCCGCATGAAGCGACCAATACCACGGTTTTGATGAACTGCGAGCAGCCAATAAGTGATGGCAACTATATTCCTATCACTCCTTGCAACAGAAGCAATGTGACTTCATCTTCCTCACAAGCATATGTTTATGCATTAGTCGGCGGAGGAGACTCCCTGCTGGTGAATGATATTAAGTATTCATGCACCATTAGCAGGACTATTATTACTCAATTCTTGAAGCCCGGCAATCTTTCAATGTCAGATTTGCAAGAAATACTTCCTCAGGGGCTTGATATTTCATTCTTGCCCTTCCGTTGCAAAAGCGAATGCCATGTGAAAGGGCCATACTGCGATCTAGATTGGACCAAAAATACTGTAAAATGGTACTCTTTTGGGTATTGGTTCTCTGAATATTTGGAATCTTTAAGGGATCGGAGCACCTTTTCAAGCAACGGTGTGAGAGAAAGATACAACTACTACTACCACTATGAAACTGCACTTTACCTTGGTTGGATAATAAGATACATAGGCATGATCATCATCGGGAGGGCCATACCTGGTATTTTGTGTTTGCTTGTCTATTTAATCTACAAGTTTCCACGAAGACACTTATCATTGGATGATGGTATTGAAGAATTTCTACATAGCCATAAAAATCTTCAGCCAATCAAATACTCATATTCAGAGATAAAAAAGATGACTCATAATTTTAAGAATAAATTAGGTCAAGGAGGTTTTGGCTCTGTGTACAAAGGAAAACTCCAAAGTGGTCGCATTGTAGCTGTAAAAATGTTAGTTATGTCAAAAGCTAATGGGCAAGATTTCATCAATGAAGTTGCCACAATCGGAAGGATTCATCATGTTAATGTTGTGAGACTTGTTGGATTTTGTATACAGAGATCAAAATGGGCTCTTGTATATGACTTCATGCCAAATGGGTCTCTTGATAAGTTTGTTTTTCTTGACCAAGGAAACAACATTCCCTTGAATTGGGAAAGATTATACAAGATTGCACTTGGAGTGGGACGTGGGATTGAATACTTACATCAGGGATGTGACATGCAAATTCTCCATTTTGATATCAAGCCACACAACATTCTTCTTGATGAAGACTTCACACCAAAAGTTTGA 1479 0.3969 MLREAKVVALTVLHTFLLAICAANGNQTCRPSSCGDIKKISNPFRLKGDPSGCGDPDYELVCENNRTMVNLEHGKYYVADINYVNYTIRVVDPGVEKGNCFSAPLYSLTREIFRSDKRAYFLNPHEATNTTVLMNCEQPISDGNYIPITPCNRSNVTSSSSQAYVYALVGGGDSLLVNDIKYSCTISRTIITQFLKPGNLSMSDLQEILPQGLDISFLPFRCKSECHVKGPYCDLDWTKNTVKWYSFGYWFSEYLESLRDRSTFSSNGVRERYNYYYHYETALYLGWIIRYIGMIIIGRAIPGILCLLVYLIYKFPRRHLSLDDGIEEFLHSHKNLQPIKYSYSEIKKMTHNFKNKLGQGGFGSVYKGKLQSGRIVAVKMLVMSKANGQDFINEVATIGRIHHVNVVRLVGFCIQRSKWALVYDFMPNGSLDKFVFLDQGNNIPLNWERLYKIALGVGRGIEYLHQGCDMQILHFDIKPHNILLDEDFTPKV* 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g1132 492 PANTHER RUST RESISTANCE KINASE LR10-RELATED 325 492 IPR045874 GO:0004672
Vvi16g1132 492 FunFam serine/threonine-protein kinase PBS1-like 323 425 - -
Vvi16g1132 492 FunFam Os07g0541700 protein 426 492 - -
Vvi16g1132 492 Gene3D Transferase(Phosphotransferase) domain 1 426 492 - -
Vvi16g1132 492 Gene3D Phosphorylase Kinase; domain 1 327 425 - -
Vvi16g1132 492 ProSiteProfiles Protein kinase domain profile. 351 492 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi16g1132 492 Pfam Wall-associated receptor kinase galacturonan-binding 29 92 IPR025287 GO:0030247
Vvi16g1132 492 SUPERFAMILY Protein kinase-like (PK-like) 330 492 IPR011009 -
Vvi16g1132 492 ProSitePatterns Serine/Threonine protein kinases active-site signature. 472 484 IPR008271 GO:0004672|GO:0006468
Vvi16g1132 492 Pfam Protein kinase domain 353 489 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi16g1132 492 SMART serkin_6 351 492 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi16g1132 492 ProSitePatterns Protein kinases ATP-binding region signature. 357 379 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g1132 Vvi-Chr16 19773403 19776530 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g1132 10 492 Receptor kinase-like Gene Family AT1G66910 29.921 2.03e-55 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Vvi16g1132 Pkinase 6.3e-27 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g1132 - - vvi:100248186 981.089