Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g1130 ATGAGATTGTTTGCAGAGATTAATGGAGGGAGCCAAGATGATGAGTGCAAGGCGTCAAGGTGCAGTCACCATGGTCCACTCATCCGGTTTCCGTTCAGGCTAAAACACCAGCCAGAACACTGCGGATATCCGAAGTTTGAGTTATCATGTTCAGAAGAGAAGCGGACCATACTAGAGCTGCCCTATTCAGGAAAGCTCTGGGTGAAGGAAATAAATTACGCTTCTCAGGAGATTGGTGTCCATCACTCGGATGATTGCCTTCAAAGGCAGATTCTAAACTTTAATTTATCTGCCTCTCCCTTCACATATGAGTACGCATACGACTTCTCCTTCTTCAATTGTTCAGAAAGTAAAGCAGAGTCATTTTGGCTTATATCCATCCCTTGCAGTTTTCTCTCTAGTAACCCAGTTTATGCCACTTGGTCCTCTCGGTCTCTCGCTGAAGTGAACTTATCCTCTTGCTGGAAGATTTTCAATGCTACACTCCCAGAAAATTATATATATGGAGGGGAATACGATACTTTTATGAATTGGTCAAAACCTATGTGCGGAAAGTGTGAAGCAAAAGGAAACAAGTGCCAACGGAAGAAGAATAATAGCACGGAACCTGAAATCGAATGCATTGATAAACCAGCAAAAGGTGCTCCAATGGATAAAATGGTGCTTACAGAAGCAATCCTTGGTTTCCTTCATTTCACTTTTGGAATCTTTATAATATTTATTGTCTATTGCTCTAATAAGTTGAAAAGAGAGCATAGAATAAATATTCAAAAGTTTTTGGAAGATTATAGAGCTCTCAAGCCCTCAAGGTACTCCTATGCTGATATTAAAAAGATCACAAATAATTTCAAGGACAAACTAGGTCAAGGAGGTTATGGGACTGTTTATAAAGGAAAGCTCTCAAATGAAGTTTTTGTTGCAGTAAAGATCCTTGATGATTTCAAAGGAAACGGGGAAGATTTCATTAATGAAGTAGGAACAATGAGTACCATACATCATGTTAACGTGGTTCGGTTGCTCGGGTTTTGTGCAGATGGATATAAGCGAGCTTTGATTTATGAATTTTTACCAAATGAGTCACTAGACAAGTTCATATTTTCAGCATTTGGCAATAATTATTCTCTAGGTTGGCATAAGCTTCAAGATATTGCTATTGGCATAGCTAAAGGTATTGAGTATCTTCACCAAGGTTGTGATCAAAGAATCCTTCATTTGGATATCAAACCTCATAATATTTTGCTTGATCATAACTTTAATCCGAAGATTTCTGATTTTGGTTTAGCCAAATTATGCTCTAAGGAGCAAAGTGCAGTATCTATGACAGCAGCAAGGGGGACCATGGGTTATATTGCACCAGAAATGCTATCAAGAAATTTTGGGAATGTGTCTTCTAAGTCAGATGTTTATAGTTTTGGTATGTTGTTGATTGAAATGGTAGGGGGAAGGAAGAATATTGATGCTACAGTAGAAAATATTAGTCAAGCATACTTCCCAGAATGGCTCTATAATCATTTGGATCAAGAGCAAGAGGTACACATCCGAATTGAGGACGAAAGTGATATTAAAATAACAAAGAAACTAAGCATCATAGGGCTTTGGTGTATCCAATGGTATCCAATAGATCGTCCTTCCATGAAAATTGTGGTTGGAATGTTGGAAGGAGAAGAAGGCAATTTAGTTATGCCTCCTAATCCTTTTACCTCTATGGGACAAACAAGGACAAGTGTTAGAAGACGCAAAACATCTATCCAACCAGAGTTGACAGTCATATCAGAAATAGAATAA 1785 0.3832 MRLFAEINGGSQDDECKASRCSHHGPLIRFPFRLKHQPEHCGYPKFELSCSEEKRTILELPYSGKLWVKEINYASQEIGVHHSDDCLQRQILNFNLSASPFTYEYAYDFSFFNCSESKAESFWLISIPCSFLSSNPVYATWSSRSLAEVNLSSCWKIFNATLPENYIYGGEYDTFMNWSKPMCGKCEAKGNKCQRKKNNSTEPEIECIDKPAKGAPMDKMVLTEAILGFLHFTFGIFIIFIVYCSNKLKREHRINIQKFLEDYRALKPSRYSYADIKKITNNFKDKLGQGGYGTVYKGKLSNEVFVAVKILDDFKGNGEDFINEVGTMSTIHHVNVVRLLGFCADGYKRALIYEFLPNESLDKFIFSAFGNNYSLGWHKLQDIAIGIAKGIEYLHQGCDQRILHLDIKPHNILLDHNFNPKISDFGLAKLCSKEQSAVSMTAARGTMGYIAPEMLSRNFGNVSSKSDVYSFGMLLIEMVGGRKNIDATVENISQAYFPEWLYNHLDQEQEVHIRIEDESDIKITKKLSIIGLWCIQWYPIDRPSMKIVVGMLEGEEGNLVMPPNPFTSMGQTRTSVRRRKTSIQPELTVISEIE* 595
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g1130 594 ProSiteProfiles Protein kinase domain profile. 281 567 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi16g1130 594 Pfam Wall-associated receptor kinase galacturonan-binding 16 80 IPR025287 GO:0030247
Vvi16g1130 594 Pfam Protein kinase domain 284 546 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi16g1130 594 SMART serkin_6 281 552 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi16g1130 594 Gene3D Phosphorylase Kinase; domain 1 256 355 - -
Vvi16g1130 594 PANTHER RUST RESISTANCE KINASE LR10-RELATED 250 571 IPR045874 GO:0004672
Vvi16g1130 594 FunFam PR5-like receptor kinase 356 563 - -
Vvi16g1130 594 Gene3D Transferase(Phosphotransferase) domain 1 356 559 - -
Vvi16g1130 594 FunFam serine/threonine-protein kinase PBS1-like 249 355 - -
Vvi16g1130 594 SUPERFAMILY Protein kinase-like (PK-like) 265 553 IPR011009 -
Vvi16g1130 594 ProSitePatterns Protein kinases ATP-binding region signature. 287 309 IPR017441 GO:0005524
Vvi16g1130 594 ProSitePatterns Serine/Threonine protein kinases active-site signature. 402 414 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g1130 Vvi-Chr16 19745443 19747737 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g1130 21 593 Receptor kinase-like Gene Family AT1G66910 34.769 8.11e-110 342
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Vvi16g1130 Pkinase 4.7e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g1130 - - vvi:100854640 1228.39