Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g1126 ATGGTCAGTAAAACGACGTCGGATGATAGAAGACTGAGTCGACTCAATGCAAAGCGAGTCAGGAATGCTCGACGGAGGAGGCTGGAGTTCCGGCGAATGAAGCCGAAATGCCAATCTGAGACCGACGTCGGGGTCGGGACCGGCGTCGATGAGAAGGAAGAGAAATCCAATGTGGAAGACTGCTCGACAGAGATATCGCTGTCGTTCTCCTCGTCGTCCCCGTCGTCCTCGGAGAACGACGCAATTCCGGCTAAGAAGACGGAAGTTGCACGAAGTTTTCAGCCTCCGTCGTACGGGACGGTGTCGGTGATTGGGAGGAGGAGGGAAATGGAGGATGCGGTGAGGAGAAGGAGAATTGCGGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTGGCCAACTGCGGCGACTCCAGAGCTGTGATATGCAGAGATGGTGTCGCCGTGCCTTTGTCAAACGATCATAAGCCAAACAGACCAGATGAACTGGATAGGGTAGAAGCTGCGGGAGGAAGAGTCATAAATTGGGACGGATACCGAGTCTTGGGAGTACTTGCCACTTCGAGATCTATAGGCGACCAGCACCTCAAGCCATTTGTGATATCAGAACCGGAAGTCACAGTGAGTGAGCGAACCGACGCCGACGAGTTCCTAATTCTAGCAAGCGATGGCCTGTGGGACGTGATATCGAATGAGGTTGCATGTCAAGTTGTGAGGAGATGTCTGGACGGCCAAGCGGGGCGAATTCGGAAGATTGAAAATGGAAGATCATCACATGCAATTGAAGCAAAAAGTCGAGTTGCAGAGGCAGCAACTCTGCTGGTAGAGATGGCAATGGGACGAGGTAGTAGAGATAACATAAGTGCCATAGTAGTTGAGCTGAAGAAACCCAAAACTGGAAATTTCTGTGAATAG 984 0.4654 MVSKTTSDDRRLSRLNAKRVRNARRRRLEFRRMKPKCQSETDVGVGTGVDEKEEKSNVEDCSTEISLSFSSSSPSSSENDAIPAKKTEVARSFQPPSYGTVSVIGRRREMEDAVRRRRIAVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVANCGDSRAVICRDGVAVPLSNDHKPNRPDELDRVEAAGGRVINWDGYRVLGVLATSRSIGDQHLKPFVISEPEVTVSERTDADEFLILASDGLWDVISNEVACQVVRRCLDGQAGRIRKIENGRSSHAIEAKSRVAEAATLLVEMAMGRGSRDNISAIVVELKKPKTGNFCE* 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g1126 327 CDD PP2Cc 155 317 IPR001932 -
Vvi16g1126 327 MobiDBLite consensus disorder prediction 61 82 - -
Vvi16g1126 327 Gene3D - 150 323 IPR036457 -
Vvi16g1126 327 MobiDBLite consensus disorder prediction 1 91 - -
Vvi16g1126 327 SMART PP2C_4 34 315 IPR001932 -
Vvi16g1126 327 Pfam Protein phosphatase 2C 154 310 IPR001932 -
Vvi16g1126 327 MobiDBLite consensus disorder prediction 46 60 - -
Vvi16g1126 327 SUPERFAMILY PP2C-like 154 319 IPR036457 -
Vvi16g1126 327 PANTHER PROTEIN PHOSPHATASE 154 317 IPR015655 GO:0004722|GO:0006470
Vvi16g1126 327 MobiDBLite consensus disorder prediction 17 32 - -
Vvi16g1126 327 MobiDBLite consensus disorder prediction 1 16 - -
Vvi16g1126 327 ProSiteProfiles PPM-type phosphatase domain profile. 1 317 IPR001932 -
Vvi16g1126 327 Coils Coil 121 121 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g1126 Vvi-Chr16 19697636 19699939 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g1126 155 319 PP2C-type Phosphatase Gene Family AT1G07430 53.968 6.97e-61 199
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g1126 K14497 - vvi:100267287 492.656