Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g1118 ATGAGGAGAAATTTGTTAAAGGTTTGGAAGGCATTTGGATTCCTGAAAGCGGGGAATTCGCAGAATAAGGAAACAATGACAAGGGTTAAGAATGATGATTGTGATGCTACCACTAATGGCCTCTCTGATGAATGTTACAAGTCTTGGATGATGGAACACCCATCAGCAATAACCTCGTTTGATCAGATGGTGAGCAAAGCAAAAGGGAAGTCCATCGTTGTGTTTTTAGATTATGATGGGACCCTCTCACCAATAGTGGACGATCCTGATCTTGCTTTCATGTCTGATGAGATGCGTTCCGCTGTACGTGAAATCGCAAAAAACTTTCCAACCGCCATTATTAGTGGTCGAAGCCGAGAGAAGGTGTATGAATTTGTACAGTTAACAGAGGTATACTATGCTGGGAGCCATGGGATGGACATAATGGGTCCACCACACCAAGTTAAATCCTGTGATGCGCAGTACCAAATCAAAGCCCTTGATAAACAGGGCCATGAAGTAATCCTATTCCAACCCGCTAAAGATTTCTTGCCTGCAATCCAAAAGATATCCAATGTGTTGGAGGAAAAAACCCAGAAAATAGAAGGTGCCCTGATAGAAGATAATAGATTTTGCATTTCAGTGCATTTTCGTAGAGTTCATGAAAAGGACTATGACACCTTGGAGGAGAAGGTGAAGTCTGTGGTTAAAAATTATCCCGAATTTCGCCTGACAAGTGGTAAAAAGGTCATGGAAATTCGACCATCCATCAAATGGGACAAAGGGTGTGCGTTGGAGTATTTACTGGACACTCTAGGGTTCAGTGACTCGAGCGATGTTCTCCCATTGTACATTGGAGATGATCGAACTGATGAAGATGCTTTTAAGGTTATACGGAGGAGAGGAGAAGGGTATCCGATCATTGTGTCGTCCACTCCAAAGGAAACCAAAGCTGCGTATTCTCTCCGCGACCCATCAGAGGTTTTATCCTTCTTAACTCATCTTGCAAAATGGAGGAACTCATTTTCTGGTCATTCTGTTGATTAG 1026 0.4279 MRRNLLKVWKAFGFLKAGNSQNKETMTRVKNDDCDATTNGLSDECYKSWMMEHPSAITSFDQMVSKAKGKSIVVFLDYDGTLSPIVDDPDLAFMSDEMRSAVREIAKNFPTAIISGRSREKVYEFVQLTEVYYAGSHGMDIMGPPHQVKSCDAQYQIKALDKQGHEVILFQPAKDFLPAIQKISNVLEEKTQKIEGALIEDNRFCISVHFRRVHEKDYDTLEEKVKSVVKNYPEFRLTSGKKVMEIRPSIKWDKGCALEYLLDTLGFSDSSDVLPLYIGDDRTDEDAFKVIRRRGEGYPIIVSSTPKETKAAYSLRDPSEVLSFLTHLAKWRNSFSGHSVD* 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g1118 341 FunFam Trehalose 6-phosphate phosphatase 178 336 - -
Vvi16g1118 341 Pfam Trehalose-phosphatase 75 319 IPR003337 GO:0003824|GO:0005992
Vvi16g1118 341 Coils Coil 180 200 - -
Vvi16g1118 341 Gene3D - 178 339 IPR023214 -
Vvi16g1118 341 Gene3D - 72 166 IPR023214 -
Vvi16g1118 341 FunFam Trehalose 6-phosphate phosphatase 173 249 - -
Vvi16g1118 341 NCBIfam HAD-IIB family hydrolase 74 294 IPR006379 -
Vvi16g1118 341 NCBIfam trehalose-phosphatase 70 329 IPR003337 GO:0003824|GO:0005992
Vvi16g1118 341 CDD HAD_TPP 73 321 - -
Vvi16g1118 341 SUPERFAMILY HAD-like 73 331 IPR036412 -
Vvi16g1118 341 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 31 334 IPR044651 GO:0004805|GO:0005992
Vvi16g1118 341 FunFam Trehalose 6-phosphate phosphatase 72 157 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g1118 Vvi-Chr16 19585122 19587018 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g1118 68 330 Trehalose Biosynthesis Gene Families AT1G06410 26.882 8.79e-10 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g1118 K01087 - vvi:100258645 689.493