Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g1117 ATGGAGTGCAATAAGGATGAGGCCTCTAGAGCGAAAGATATTGCTGTGAGGAAGTTCAGAGAGAAAGACTTTTTGGGTGCAAAGAAATTTGTTTTAAAGGCCCAAAATTTGTATCCTGGGCTTGAGGGTCTTTCTCAGATGTTAACTATACTTGATGTGTACATCTCAGCTGAGAAGAAAGTAAGTGGAGAAGTGGATTGGTATGGGATACTTGGTGTAAGCCCCTTGGCTGATGAGGAGACTGTGAAGAAACAATACAGGAAGCTGGCTCTTATACTTCATCCTGATAAAAACAAGTCCATTGGTGCAGATGGTGCATTTAAGCTTGTTTCAGAGGCCTGGAGTTTATTATCCGATAAGGGCAAGAGATTATCATATAACCAGAAGAGGGATGTGAAAGGATCGCAGCAGAAAGTTCCTAGCCAGAATGGGGTTCCATCAGCACCTGCTAGTGCAAATGGTGTTCACAATTTTACCAGTGGTGTGGCTTCCAATGCAAGGACTCATAGCAATGCCAATCGTCCGAGCCCCACCTCGGTTCCTTCTCCATCCCATAGAAGAACTGATACCTTCTGGACTGTTTGCAATCGATGCAAGACACAGTATGAATATCTCAGGATTTATCTCAATCACACTCTGCTTTGTCCCAATTGTCATGAGGCGTTTTTGGCTTTGGAGAAGGCTCCACCTTCAAATGTTCCAAAATCATCCAAGTGGTCTTCCCGCCAGCATCCTCAGAGTTCAAATCATTTTGTCTCAAACAATAACTCATTCCAGACAGACTTCCAGTGGGATACGCACTCTAGAACAGCGGGTGTAGGTGGCGTGGTTGGATCAGCTTCCTCTGCTGCTCAAGCTGCAAGTGAGAAAAAGAAGAGAGGTCGTGAGGAAGTACAAGCTTCTGGATGGGAGAGGGGTCATTCTAAGAATATGAGTGGTTCATCTTCCGGGCATCCTAGTTCCAATTCTACTTCTGTTCTCAAAGGGGAAAAAACATTGAAAAAGAGAAGAATAGATGATGATGGCACCAATGGTTATGGAGGGAACATTGTAAATCAAACAGCCACTGGAAATGGAGGAACCGGTGCCGTGGGCACAGCTGGATTAAGAAAGGGCAGTTTTGAAACAGAAAGGGTTTATGGTGTTCCTGGGACTAATAATAAGCCCAATAGTTATAAAGAGATGTCACTGTTTGAAATTCGGAATATGCTGATGGAAAAGGCACGGAAAGAAATTCGCAATAAACTTTCAGAATGGAGCTCAACAGCTGCAGCCAAGGCTGGGAACAAAGAAAAAGAGAAGGTGAAACTGAAAGAAAAACAAAAAGGTGCAGTGAATGGTGATGGTCCTGATCCAAATAAAAATTCCAAGAAAAGAGACCAAGCTAAGAAGTTTTCTCCTGGCACTTCAGCTGCTGATACAGATAGCGAGGCCCCTGCGCCTATGGCAATCAATGTTCCAGATTCTGATTTTCATGATTTTGATTTGGACCGAACTGAAAGTTCCTTTGGAGATAATCAGGTCTGGTCCGCATATGATGATGATGATGGGATGCCTCGGTTCTATGCACTGATTCACAAAGTGATCTCTTTGAAACCATTCAAGATGAAGATCAGTTGGCTTAACTCTAAAAGCAACAGCGAATTTGGTTCAGTAGACTGGATAGGTTCTGGCTTTACCAAAACTTGTGGGGATTTTAGGATTGGGAGGCATGAAATCTATGATTCACTAAATTCTTTCTCACACAGGTTGGTTGAATGGACAAAAGGTACACGTGGGGCCATTCGCATACTTCCTAAAAAGGGGGATGTCTGGGCCCTTTATAGAAACTGGTCCCCAGATTGGAATGAAAATACTCCGGATGAAGTGATACACAAGTATGACATGGTGGAAGTCCTTGATGACTATAATGAGGATTATGGTGTATCTGTTACTCCTCTCATCAAGGTTGCTGGTTTTAGAACAATATTTCACAGGCATGAGGACCCCAAGGAAGTCAGGACAGTTCTGAGAGAAGAGATGTTTTGTTTCTCTCATCAGGTTCCTAACCGCTTGCTTACAGGCCAAGAAGCTCAAAATGCTCCAAAGGGTTGCCGTGAGCTAGATCCTGCAGCTACCCCTTTAGAACTTCTTCAGATAATTACAGAAGCTACTGAGGCACCGGTTGTGAATGTTGGAAAGGATGAGGAAGGGAGGTTGCAAAGTGCCCAGCAAATTAAGCTAGACAAAATGGTGGACTATGCTGCAAAATCTAATGATGGGGAGATTGTAGAGAACAGTGAACAAATCAAGTCAGAAGAGATAATGGGGCATGCCAAAGTAGCCAGGGAAGCAGGTGGTGGATAA 2346 0.4365 MECNKDEASRAKDIAVRKFREKDFLGAKKFVLKAQNLYPGLEGLSQMLTILDVYISAEKKVSGEVDWYGILGVSPLADEETVKKQYRKLALILHPDKNKSIGADGAFKLVSEAWSLLSDKGKRLSYNQKRDVKGSQQKVPSQNGVPSAPASANGVHNFTSGVASNARTHSNANRPSPTSVPSPSHRRTDTFWTVCNRCKTQYEYLRIYLNHTLLCPNCHEAFLALEKAPPSNVPKSSKWSSRQHPQSSNHFVSNNNSFQTDFQWDTHSRTAGVGGVVGSASSAAQAASEKKKRGREEVQASGWERGHSKNMSGSSSGHPSSNSTSVLKGEKTLKKRRIDDDGTNGYGGNIVNQTATGNGGTGAVGTAGLRKGSFETERVYGVPGTNNKPNSYKEMSLFEIRNMLMEKARKEIRNKLSEWSSTAAAKAGNKEKEKVKLKEKQKGAVNGDGPDPNKNSKKRDQAKKFSPGTSAADTDSEAPAPMAINVPDSDFHDFDLDRTESSFGDNQVWSAYDDDDGMPRFYALIHKVISLKPFKMKISWLNSKSNSEFGSVDWIGSGFTKTCGDFRIGRHEIYDSLNSFSHRLVEWTKGTRGAIRILPKKGDVWALYRNWSPDWNENTPDEVIHKYDMVEVLDDYNEDYGVSVTPLIKVAGFRTIFHRHEDPKEVRTVLREEMFCFSHQVPNRLLTGQEAQNAPKGCRELDPAATPLELLQIITEATEAPVVNVGKDEEGRLQSAQQIKLDKMVDYAAKSNDGEIVENSEQIKSEEIMGHAKVAREAGGG* 782
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g1117 781 MobiDBLite consensus disorder prediction 127 186 - -
Vvi16g1117 781 SUPERFAMILY Chaperone J-domain 60 126 IPR036869 -
Vvi16g1117 781 MobiDBLite consensus disorder prediction 233 256 - -
Vvi16g1117 781 Gene3D DnaJ domain 64 174 IPR036869 -
Vvi16g1117 781 MobiDBLite consensus disorder prediction 288 303 - -
Vvi16g1117 781 MobiDBLite consensus disorder prediction 273 360 - -
Vvi16g1117 781 MobiDBLite consensus disorder prediction 427 445 - -
Vvi16g1117 781 PRINTS DnaJ domain signature 86 101 IPR001623 -
Vvi16g1117 781 PRINTS DnaJ domain signature 102 122 IPR001623 -
Vvi16g1117 781 PRINTS DnaJ domain signature 68 86 IPR001623 -
Vvi16g1117 781 MobiDBLite consensus disorder prediction 130 186 - -
Vvi16g1117 781 ProSiteProfiles dnaJ domain profile. 66 130 IPR001623 -
Vvi16g1117 781 Pfam DnaJ domain 66 127 IPR001623 -
Vvi16g1117 781 ProSitePatterns Nt-dnaJ domain signature. 107 126 IPR018253 -
Vvi16g1117 781 MobiDBLite consensus disorder prediction 229 256 - -
Vvi16g1117 781 PANTHER BNAC03G44070D PROTEIN 1 707 - -
Vvi16g1117 781 SMART dnaj_3 65 122 IPR001623 -
Vvi16g1117 781 MobiDBLite consensus disorder prediction 420 484 - -
Vvi16g1117 781 Pfam Domain of unknown function (DUF3444) 482 690 IPR024593 -
Vvi16g1117 781 CDD DnaJ 66 119 IPR001623 -
Vvi16g1117 781 MobiDBLite consensus disorder prediction 346 360 - -
Vvi16g1117 781 MobiDBLite consensus disorder prediction 305 328 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g1117 Vvi-Chr16 19570195 19572540 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g1117 4 230 SUVH1 or 3-interacting DNAJ domain-containing protein superfamily AT2G01710 31.489 8.80e-30 119
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g1117 - - vvi:100263793 1501.11