Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g1115 ATGGTATGCAGCGGCTGCATAAGGAATGTGATTGTTCAAGCTGGCCACATTGGACAATCAGCTGTGAGAAGCGTTCGATTAAGAGCAATCTATAGAAGTTTGAATGCAAATATTGGATTGAGGTATACCTGGAATCGACAGTTTAGGGGCAGTGTAAAGATGATGGTTGATACGGCGAAGGGGGAACCTATTATCAATGTGTTGCCAGAGAAAGAGGACGATGGTGGCTATGCCAGTGGAGGATGGAAAAGTGAAGACGGAAAACTGAGCTGTGGGTATTCAAGTTTCAGGGGAAAGAGAGCTAGCATGGAGGATTTCTATGATGTAAAAATGTCCAAGATTGATGGGCAAACAGTTTGCCTTTTTGGAATATTTGATGGTCATGGTGGTTCTCGTGCTGCGGAGTTTTTGAAGGAGCATCTCTTTGAGAATTTGATGAAGCATCCAGAGTTCATGACAAATACCAAATTGGCTATAAGTGAAACATATCAACAAACTGACATGAATTTTCTGGATGCTGAAAGAGATACTTACCGAGATGATGGTTCTACTGCTTCCACAGCAGTGCTTGTTGGTAACCATCTCTATGTTGCCAATGTTGGAGATTCGAGGGCTGTGATATCAAAAGCTGGAAAAGCAATCCCTCTTTCTGAGGATCATAAACCAAATAGAAGTGACGAGCGAAAAAGAATTGAAAATGCTGGAGGTGTTGTGATGTGGGCAGGAACTTGGAGGGTGGGAGGAGTCTTAGCAATGTCTCGTGCTTTTGGTAACCGCATGCTGAAGCAATATGTTGTGGCAGAACCCGAGATCCAGGATCAAGAGGTTGATGAAGAACTTGAATTACTTGTGCTTGCTAGTGATGGACTCTGGGACGTTGTACCTAACGAGGATGCCATTGCACTTGCTCGAACAGAAGAAGAACCCGAGGCAGGGGCCCGGAAATTGACGGAGACTGCTTTTACCCGGGGGAGTGCCGACAACATAACCTGCATCGTGGTCAGGTTCCACCATGAGAAGGTTGATCCCGATCCACCTAACATGGAGCAGGCTTAG 1056 0.4536 MVCSGCIRNVIVQAGHIGQSAVRSVRLRAIYRSLNANIGLRYTWNRQFRGSVKMMVDTAKGEPIINVLPEKEDDGGYASGGWKSEDGKLSCGYSSFRGKRASMEDFYDVKMSKIDGQTVCLFGIFDGHGGSRAAEFLKEHLFENLMKHPEFMTNTKLAISETYQQTDMNFLDAERDTYRDDGSTASTAVLVGNHLYVANVGDSRAVISKAGKAIPLSEDHKPNRSDERKRIENAGGVVMWAGTWRVGGVLAMSRAFGNRMLKQYVVAEPEIQDQEVDEELELLVLASDGLWDVVPNEDAIALARTEEEPEAGARKLTETAFTRGSADNITCIVVRFHHEKVDPDPPNMEQA* 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g1115 351 ProSiteProfiles PPM-type phosphatase domain profile. 90 336 IPR001932 -
Vvi16g1115 351 SMART PP2C_4 80 334 IPR001932 -
Vvi16g1115 351 ProSitePatterns PPM-type phosphatase domain signature. 121 129 IPR000222 GO:0043169
Vvi16g1115 351 SUPERFAMILY PP2C-like 87 337 IPR036457 -
Vvi16g1115 351 CDD PP2Cc 90 336 IPR001932 -
Vvi16g1115 351 PANTHER PROTEIN PHOSPHATASE 78 336 IPR015655 GO:0004722|GO:0006470
Vvi16g1115 351 SMART PP2C_SIG_2 72 336 IPR001932 -
Vvi16g1115 351 FunFam Probable protein phosphatase 2C 76 82 342 - -
Vvi16g1115 351 Gene3D - 82 342 IPR036457 -
Vvi16g1115 351 Pfam Protein phosphatase 2C 92 329 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g1115 Vvi-Chr16 19544237 19551085 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g1115 1 342 PP2C-type Phosphatase Gene Family AT5G53140 71.671 0.0 524
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g1115 K17506 - vvi:100262129 691.034