Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g1114 ATGAACTACCGACAAGAGAAGTTTGTGAGGTTCCAGGATTGGAGTTCAGAGAGAAGTAGTGAAGGGAAAATTCCCATAAACAATGGAGTAAGATCAGGGAAAATCAGACTAGCAATAAACTCAGTTTCAGGGAAGTTCCAGAGAGGTTTGGAATGTGGTTCTGAACGGATTAACAGCATTAGAAGGTCATTGAAATCCTTTTCTTTCAGAAGAAATCTGGAAAAGGGTTCCGGAAAGAAAATTCTTGATCCACAGGGGCCATTCCTCCAAAAGTGGAATAAGATATTCGTTCTATCATGCATTATTGCAGTCTCCCTAGATCCTTTGTTCTTTTACATCCCAGTGATTGATAAATTAAAGAAATGCCTTTCGTTGGACGAATCATTGCAGATTACAGCCAGTGTTTTGCGTTCCTTCACCGATATCTTTTATATACTCCATATTATTTTTCAATTTCGAACTGGTTTTATTGCTCCTTCTTCTCGAGTATTTGGAAGAGGTGTTCTAGTAGAAGATTCTTGGGCAATAGCAAGGAGATATTTGTCCTCGTACTTCCTAATCGACATCCTCGCTGTTCTTCCCCTCCCACAGGTGGTAATTTGGATTATCATTCCCAAACTAGGAGGCTCAAAATACATGAATACAAAGAGGCTGTTGAAATTTGTTGTCTTCTTCCAATACATACCACGGGTGCTCCGAGTTCGTCCGTTATACAAAGAAGTCACAAGAACTTCTGGCATACTCACTGAAACTGCATGGGCTGGAGCTGCATTCAATCTCTTTCTTTACATGCTTGCGAGTCATGTACTTGGAGCTTTTTGGTACTTGTTTGCTATAGATCGCGAAACTACATGCTGGACAAAAGCTTGTGGAAATGATACTTCATGCATTGATAGTTCTCTATATTGTAAAGGAACAGTGAATACAACACTTTTTAACGCTTCATGTCCTGTAATAGAACCAAATACAACGGTTTTTGATTTTGGAATATTACTTGACGCCCTTCAGTCTGGTGTTGTGGAGTCAACAGATTTTCCACAGAAGTTCTTTTACTGTTTTTGGTGGGGCCTGCAAAATCTGAGTTCTCTTGGTCAAAACCTCAAAACAAGCACCTATGTCTGGGAAATTTGCTTTGCAGTGTTCATTTCCATCTCTGGCTTGGTTTTATTTTCATTTCTTATTGGAAATATGCAGACATATCTGCAGTCCACAACCATAAGATTGGAGGAGATGAGAGTGAAAAGGCGAGATGCAGAACAGTGGATGTCTCATCGCCTGCTTCCTGAGAGTCTGAGGGAGCGAATCAGAAGGTATGAACAGTACAAGTGGCAAGAAACCAGAGGTGTTGACGAACAGAATCTACTCATTAATCTTCCCAAGGACCTTAGAAGGGACATAAAACGCCATCTCTGCTTGGCTCTGCTCAGGAGAGTGCCAATGTTCGAAAAGATGGATGAGCAACTGATGGATGCAATGTGTGACCGTCTCAAGCCAGCACTGTACACAGAAGATAGCTACATCGTCCGGGAGGGGGACCCAGTCGATGAGATGCTCTTTGTCATGCGAGGCAAGCTATCCACCATGACAACCAATGGTGGAAGGACTGGCTTCTTGAACTCTGATTATCTGAAAGCCGGTGACTTCTGTGGAGAAGAACTTCTCACATGGGCACTGGACCCCCACTCAACATCAAACCTTCCCATTTCAACCAGAACCGTCCTAGCCCTCTCCGAAGTTGAAGCCTTTGCTCTAATGGCTGACGACCTGAAGTTTGTTGCCTCCCAATTCCGAAGACTCCACAGCAAGCAGCTCCGCCACACCTTCAGGCTCTACTCCCACCAGTGGAGGACTTGGGCTGCCTGTTTCATACAAGCCGCCTGGCGCCGCTACTGGAGGAAGAAGCTGGAAGAGTCCCTTCGGGAAGAGGAGGATAGGTTGCAGGACGCATTGGCCAAGGCAGGTGGGAGCTCACCTAGTCTAGGTGCCACCATTTATGCATCCCGATTCGCAGCCAATGCTCTCCGTGCTTTGCGGCGTAACAAGACACGAAAAGCAAGGTTGCCAGAGAGAATATCACCGATACTGCTTCAGAAACCGGCGGAGCCGGATTTTACTGCTGAAGATCAATAG 2130 0.4474 MNYRQEKFVRFQDWSSERSSEGKIPINNGVRSGKIRLAINSVSGKFQRGLECGSERINSIRRSLKSFSFRRNLEKGSGKKILDPQGPFLQKWNKIFVLSCIIAVSLDPLFFYIPVIDKLKKCLSLDESLQITASVLRSFTDIFYILHIIFQFRTGFIAPSSRVFGRGVLVEDSWAIARRYLSSYFLIDILAVLPLPQVVIWIIIPKLGGSKYMNTKRLLKFVVFFQYIPRVLRVRPLYKEVTRTSGILTETAWAGAAFNLFLYMLASHVLGAFWYLFAIDRETTCWTKACGNDTSCIDSSLYCKGTVNTTLFNASCPVIEPNTTVFDFGILLDALQSGVVESTDFPQKFFYCFWWGLQNLSSLGQNLKTSTYVWEICFAVFISISGLVLFSFLIGNMQTYLQSTTIRLEEMRVKRRDAEQWMSHRLLPESLRERIRRYEQYKWQETRGVDEQNLLINLPKDLRRDIKRHLCLALLRRVPMFEKMDEQLMDAMCDRLKPALYTEDSYIVREGDPVDEMLFVMRGKLSTMTTNGGRTGFLNSDYLKAGDFCGEELLTWALDPHSTSNLPISTRTVLALSEVEAFALMADDLKFVASQFRRLHSKQLRHTFRLYSHQWRTWAACFIQAAWRRYWRKKLEESLREEEDRLQDALAKAGGSSPSLGATIYASRFAANALRALRRNKTRKARLPERISPILLQKPAEPDFTAEDQ* 710
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g1114 709 Coils Coil 632 652 - -
Vvi16g1114 709 FunFam Cyclic nucleotide-gated ion channel 1 478 596 - -
Vvi16g1114 709 CDD CAP_ED 480 611 IPR000595 -
Vvi16g1114 709 Pfam Cyclic nucleotide-binding domain 501 590 IPR000595 -
Vvi16g1114 709 SUPERFAMILY cAMP-binding domain-like 409 602 IPR018490 -
Vvi16g1114 709 Gene3D Jelly Rolls 478 598 IPR014710 -
Vvi16g1114 709 Pfam Ion transport protein 92 406 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Vvi16g1114 709 Gene3D - 94 404 - -
Vvi16g1114 709 FunFam Cyclic nucleotide-gated ion channel 1 407 471 - -
Vvi16g1114 709 SMART cnmp_10 480 611 IPR000595 -
Vvi16g1114 709 Gene3D Helix hairpin bin 408 471 - -
Vvi16g1114 709 ProSiteProfiles cAMP/cGMP binding motif profile. 480 577 IPR000595 -
Vvi16g1114 709 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 62 704 - -
Vvi16g1114 709 SUPERFAMILY Voltage-gated potassium channels 83 402 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g1114 Vvi-Chr16 19519695 19527452 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g1114 1 708 Ion Channels AT5G53130 77.933 0.0 1131
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g1114 K05391 - vvi:100267297 1394.02