Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g1111 ATGGACCGACGCCGCCGGAAACTCCCCAAAATCGCCGCCCCCTCGCAGTCTGAAGAGGTGAGTAGTATTGAATGGGAATTCATAAACATGAGCGAACAAGAAGAAGATCTCATTTACAGAATGTACAGACTCGTCGGAGATAGGTGGGATTTGATAGCAGGTCGAATTCCGGGGCGAAAACCTGAAGAAATAGAGAGGTTTTGGATAATGAGAAATCGCCAAGGGTATGCTGAGAGGGGAAAAGAGGCTAGTCAAAAGAAGCAATAG 267 0.4719 MDRRRRKLPKIAAPSQSEEVSSIEWEFINMSEQEEDLIYRMYRLVGDRWDLIAGRIPGRKPEEIERFWIMRNRQGYAERGKEASQKKQ* 89
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g1111 88 SMART sant 26 74 IPR001005 -
Vvi16g1111 88 FunFam MYB-like transcription factor 29 71 - -
Vvi16g1111 88 Pfam Myb-like DNA-binding domain 30 69 IPR001005 -
Vvi16g1111 88 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 29 73 - -
Vvi16g1111 88 SUPERFAMILY Homeodomain-like 31 70 IPR009057 -
Vvi16g1111 88 CDD SANT 29 68 IPR001005 -
Vvi16g1111 88 Gene3D - 30 88 - -
Vvi16g1111 88 ProSiteProfiles Myb-like domain profile. 31 68 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g1111 Vvi-Chr16 19493018 19495820 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g1111 29 68 MYB Transcription Factor Family AT5G14750 52.500 1.60e-12 57.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vvi16g1111 Myb_DNA-binding 4.8e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g1111 K09422 - vvi:100233044 181.8