Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g1109 ATGGAGAACATGGGAAGTTGGGAACAAAAGAATCTGATAAATGAGCTTACGAATGGGAGAGAGCTAGCCAAACAGCTACAAATCCATCTCAGCGTGTCGTCTTCTTCACATGACGCCCGTGAATCCTTGGTCCAAAAGATCCTAACTTCATACGAGAAGGCCCTTTCATTGCTGAGGTGTAGCGGCCCAGTGGGCGAGCCACAGGCCGCCGCAGCAGGCGGAGGAGGAGCAATTGGAATAGGGATGTCTGAGTCTCCACGCTCGCTCAGTGGGAGTCCTAGGAGCGAAGATTCTGATAAGGAGCAGGAGCACAAAGATGGGTCTAGGAAGAGAAAGACATTGCCAAGGTGGACAAAGCAAGTGCAGATGTCTCTAGGGCCAGGGCCAGAAGGCCCTCTTGATGATGGGTTTAGTTGGAGGAAGTATGGGCAGAAGGACATTCTCGGAGCCAAATATCCAAGGAGCTATTACAAATGCACTCATAGAAATGCCCAAGGCTGTTTGGCTACAAAGCAAGTTCAAAGATCAGACGATGACCCAACCATCTTTGAAATCACCTACCGTGGAAGACACACTTGCACCCAAGTCTCCCAACAAATTCCACCGCCGGCAGCACTGCCGGGAAACCAAGGACTGATGGACAGCAAAGATCATCAGCAATTCAACCTCCAACCCCAACAAAACCAGCAACAAGCACAAGACATGCTCTTGAGCTTCCAAAGTGGCCTCAGAGTCGTAACAGAAGGCTTGGACACGCCAAGCGACCAAGCATTTCCCCCCTTTTGCTTCACTTCAACGTCTAATATTAAGGTCGAAGAACCTGGCTTCTCGCCTTCCATGATGGACAACAATATCGTTGGTAATTTTCCTACCTCATTTGTATCTCCTGCAGCATCTAGATCAAACTATTTTTCCATGTCGTCTGATGAAATGAACAGCCTTGGAGGAAACCAAAACCTGCAGGCCCCCGAAGCCAATCTCAATGAGATAATCTCAGCTGCTGCTTCAACCACAAACCCTCAGTTTGAGCAGTTCCCGTTTGGTTCCATGGAATTCGATCCGAACTTTAACTTCGACCACCTGGGATTCTTTTAA 1095 0.4877 MENMGSWEQKNLINELTNGRELAKQLQIHLSVSSSSHDARESLVQKILTSYEKALSLLRCSGPVGEPQAAAAGGGGAIGIGMSESPRSLSGSPRSEDSDKEQEHKDGSRKRKTLPRWTKQVQMSLGPGPEGPLDDGFSWRKYGQKDILGAKYPRSYYKCTHRNAQGCLATKQVQRSDDDPTIFEITYRGRHTCTQVSQQIPPPAALPGNQGLMDSKDHQQFNLQPQQNQQQAQDMLLSFQSGLRVVTEGLDTPSDQAFPPFCFTSTSNIKVEEPGFSPSMMDNNIVGNFPTSFVSPAASRSNYFSMSSDEMNSLGGNQNLQAPEANLNEIISAAASTTNPQFEQFPFGSMEFDPNFNFDHLGFF* 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g1109 364 Gene3D WRKY domain 128 195 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vvi16g1109 364 ProSiteProfiles WRKY domain profile. 128 191 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vvi16g1109 364 FunFam WRKY transcription factor 53 119 196 - -
Vvi16g1109 364 SUPERFAMILY WRKY DNA-binding domain 131 195 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vvi16g1109 364 SMART WRKY_cls 133 195 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vvi16g1109 364 MobiDBLite consensus disorder prediction 67 132 - -
Vvi16g1109 364 MobiDBLite consensus disorder prediction 93 110 - -
Vvi16g1109 364 Pfam WRKY DNA -binding domain 134 193 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vvi16g1109 364 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 5 264 IPR044810 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g1109 Vvi-Chr16 19477466 19479547 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g1109 3 268 WRKY Transcription Factor Family AT4G23810 42.140 4.52e-62 200
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vvi16g1109 WRKY 1.5e-27 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g1109 - - vvi:100256922 703.745