Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g1108 ATGGGCGATAGTTTATCCGACTTCTTTGAAGAGCCTGAGTTTGGTGGCGAAACCAGCTTGACTGGCGTAGCTTCCCCCGACGATCTCGATCTCTTCAGCATTTTCGAGAGTCTGGAGGGTGTCTCCGAGGTTCCTCCATTGGAGGAGACTGTGTTGGGCTCCAAAGAAGGTGAGGAAACAGCAAGATTGGTCTCTCAAAAATCTACTTCTTCCAGTGCTTTGCAGGAGTCCGAGACGGAGCTCGAAGCTTCCCCGAAGAGGAAGAGGCCCAAGCTCGCCGCACCCACTTCGTCCGAAGAGGGGAACCCAGATGGACAACAGAGGGTGTCGCATATAACTGTGGAGAGGAACCGCAGAAAGCAAATGAACGAGCATTTATCAGTGTTGAGGTCCCTTATGCCTTGCTTCTATGTCAAAAGAGGAGATCAAGCATCCATAATAGGCGGGGTGGTGGATTACATCAAGGAGTTGCAGCAAGTTCTACGGTCACTTGAAGCCAAGAAGCAAAGAAAAGTTTACAGTGAAGTTCTAAGCCCTAGGGTTGTTTCAAGTCCAAGGCCTCCGCCAATCAGCCCTAGAAAGCCACCATTAAGCCCTAGAATAAGCTTACCCATAAGCCCAAGAACCCCGCAACCAACCAGCCCTTACAAGCCTGTTAGGTTGCAGCAGGGTTACCTTTCCCCGACCATAGCTCCTTCCCTCGAACCATCTCCTTCTTCTTCAACCTCCTCCAATGACAACGCCAACGAGCTCATCGTAAATTCAAAATCAGCCATTGCTGACGTAGAGGTGAAGTACTCCTGCCCAAACGTTGTTTTGAAGACAAAATCTTCACGGATTCCCGGCCAAGCAGTGAAAATCATTTCCGCTCTAGAGGACCTTTCGCTTGAAATTCTCCATGTTAGCATCAGCTCAATCGATGAAACCATGCTCAATTCCTTCACTATCAAGTTTGGAATTGAATGCCAACTTAGCGCCGAGGAACTCGCTCACCAAGTCCAGCAGACATTCTGCTAA 1017 0.4926 MGDSLSDFFEEPEFGGETSLTGVASPDDLDLFSIFESLEGVSEVPPLEETVLGSKEGEETARLVSQKSTSSSALQESETELEASPKRKRPKLAAPTSSEEGNPDGQQRVSHITVERNRRKQMNEHLSVLRSLMPCFYVKRGDQASIIGGVVDYIKELQQVLRSLEAKKQRKVYSEVLSPRVVSSPRPPPISPRKPPLSPRISLPISPRTPQPTSPYKPVRLQQGYLSPTIAPSLEPSPSSSTSSNDNANELIVNSKSAIADVEVKYSCPNVVLKTKSSRIPGQAVKIISALEDLSLEILHVSISSIDETMLNSFTIKFGIECQLSAEELAHQVQQTFC* 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g1108 338 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 106 157 IPR011598 GO:0046983
Vvi16g1108 338 MobiDBLite consensus disorder prediction 175 219 - -
Vvi16g1108 338 Gene3D - 98 171 IPR036638 GO:0046983
Vvi16g1108 338 FunFam Transcription factor SPEECHLESS 98 172 - -
Vvi16g1108 338 Pfam Helix-loop-helix DNA-binding domain 107 158 IPR011598 GO:0046983
Vvi16g1108 338 MobiDBLite consensus disorder prediction 43 109 - -
Vvi16g1108 338 SMART finulus 112 163 IPR011598 GO:0046983
Vvi16g1108 338 MobiDBLite consensus disorder prediction 63 79 - -
Vvi16g1108 338 MobiDBLite consensus disorder prediction 182 214 - -
Vvi16g1108 338 CDD bHLH_AtFAMA_like 110 182 - -
Vvi16g1108 338 PANTHER TRANSCRIPTION FACTOR FAMA 22 337 IPR044283 GO:0003700|GO:0010052
Vvi16g1108 338 MobiDBLite consensus disorder prediction 1 25 - -
Vvi16g1108 338 MobiDBLite consensus disorder prediction 80 94 - -
Vvi16g1108 338 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 105 182 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g1108 Vvi-Chr16 19472593 19474275 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g1108 1 317 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G53210 50.552 9.33e-92 276
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vvi16g1108 HLH 2.4e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g1108 K20558 - vvi:100262241 577.4