Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g1106 ATGGGGGATCTGTGGACTATGTTTTGTGGGGAGCCCAGTTGTTTGGACAGTGGTGGTTGCAGCTCTGAATTTATTTTTTTCAATCATCCATCTTCTTGTGCGAACCATGCCTTGACAGTTTGTTTCGATATTCTGCTATTTGTCATGTTCTTATTCACTATGATTCAGAGGACATCATCAAAGCCAGTTCATGTCCCAGGTCAGTTTCAAAGGTTTTCGCCCCTGCAGATATCTTCAGCCATTTTTAACGGCTGTTTGGGATTGGTGTACTTGGGCTTGGGTGTTTGGATCTTAGAAGAAAATTTGAGGAAGACCCAGATTGTTTTACCTCTTCATTGGTGGCTTCTACCATTGCTTCAGGGATTCACATGGTTGTTAGTTGGTTTAATGGTGAGCCTTCGGGGGCAATATCTTCCAAGGTCTCCATTGCGGATTTTGTCTATTCTGGCATTCTTGTTTTCTGGCATTACCGGTGTTTTATCCATTTTTTCTGCCATTGTTTACAAAGAAGCATCAGTTGAGATAGTTTTAAACGTTCTGTCTCTTCCTGGAGCAATCTTATTACTTCTATGTGCTTACAAGGGCTACAAATATGAAGAAACTGATAAAATTGTTAATGGAAGTGGCCTTTACACTCCCCTGAATGGTGAGGCTGATGGCAGTGCTAAAACTGATTCTGTTGGTGATGTTACTCCATTTGCCAAAGCTGGATTCTTCAGTAGCATGTCGTTTTGGTGGTTGAATCCATTAATGAAAAGGGGTACAAAGAAAACTCTTGAGAATGAAGATATACCCAAGTTGCGTGAAGAAGATCGAGCAGAAAGCTGTTACTTGCAGTTCTTGGAGGAATTGATCAAGCAGAAACAAATAGAGCCATCATCCCAACCCTCAATATTGAGGGTAATCATCTTATGCTACTGGAAAGATATTTTCATCTCTGGGTTCTTTGCCCTAGTAAAGATTCTCACTCTCTCCACTGGTCCTCTGCTTCTTAATGCCTTCATTAAGGTTGCTGAAGGTAAAGAACTTTTTAAAAATGAGGGTTATGTGCTTGCCATGGCATTGTTTGTTTCAAAGAACGTGGAATCCTTATCACAAAGGCAATGGTACTTTCGAAGCAGGCTTATTGGTTTGAGAGTAAGGTCTTTGCTCACAGCAGCTATTTATAAGAAGCAATTGAGATTATCCAATGCTGCCAAAATGATACACTCTTCTGGTGAGATAACGAACTATGTTACTGTAGATGCTTATAGAATCGGTGAATTCCCTTTCTGGTTTCATCAGACGTGGACAACGAGCCTCCAGCTCTGCATTGTGCTTGTGATTCTTTTCAACATTCTTGGGCTAGCAACATTTGCAGCATTGGTGGTAATAATTCTCACTGTGCTTTGCAATGCCCCACTTGCAAAATTGCAGCATAAGTTCCAGAGTAAGCTAATGGTGGCACAAGATGAGAGACTGAGGGCATGTTCTGAGGCTCTTGTGAACATGAAGGTGTTGAAATTATATGCATGGGAAAACCATTTCAAGAATGTTATAGAAAAATTGAGGAATGTAGAGTACAAATGGTTATCAGGAGTGCAGTTGAGGAAAGGATACAATGGATTTCTCTTTTGGTCATCCCCTGTATTGGTCTCTGCTGCAACTTTTGGGGCATGCTTTTTCCTTGGAATTCCTCTAAATGCTAGCAATGTTTTCACCTTTGTTGCAGCTTTGCGCCTTGTTCAGGACCCTATTAGATCGATCCCTGATGTTATTGGTGTGGTGATTCAAGCAAAAGTTGCATTTGCACGAATTGTGAAGTTTCTTGAAGCGCCTGAGCTGCAGACTTCAAATGTGCGGCAGAAGTCCAACATAGAGAATATAAGCAACGCCATTTCGATCAAGTCGGCCAATTTTTCATGGGAAGAGAAATTATCAAAGTCAACACTAAGAGACATAAGTTTAGAGGTTAGAACTGGTGAAAAGGTGGCTATTTGTGGTGAAGTCGGCTCAGGGAAATCAACTCTTCTGGCTGCAATTCTTGGAGAGATTCCAGATGTTCAGGGAACTATTCGAGTTTATGGAAGAATTGCCTATGTTTCTCAGACAGCTTGGATCCAGACAGGCAGTATACAAGAGAATATTTTATTTGGGTCCTCTATGGATCCTGAAAGATACCAAGCAACACTTGAGAAGTGTTCATTAGTAAAGGACCTTGACTTGCTGCCCTATGGTGATCTCACTGAAATAGGGGAACGAGGAGTTAACCTGAGCGGTGGTCAGAAGCAGCGGATTCAACTTGCCCGTGCCCTTTATCAGGATGCTGATATATATCTCTTGGATGACCCATTTAGTGCTGTTGATGCACATACTGCTACAAGTCTTTTTAATGAATATGTTATGGATGCACTTTCTGGGAAGACGGTCCTACTTGTAACCCACCAAGTTGACTTCCTTCCTGCATTTGATTCTGTTCTGTTGATGTCAGACGGGGAAATCATACAAGCGGCCCCTTATCAGCAGCTATTGGTTTCAAGCCAAGAATTTGTGGATCTTGTCAATGCACACAAAGAGACTGCAGGTTCTGAAAGGCTTGCAGAGGTTACACCTGAGAAATTTGAAAATTCTGTTAGAGAGATCAACAAGACTTATACAGAGAAGCAATTCAAAGCACCTAGCGGTGATCAGTTGATCAAGCAAGAAGAGAGAGAAATAGGAGATATGGGTTTTAAGCCTTATATGCAGTATTTGAGTCAGAACAAAGGCTACTTATTCTTCTCCTTGGCTGCTCTCTCTCACATTTTGTTTGTGGCCGGTCAGATATCTCAGAACTCTTGGATGGCTGCTAATGTTGACAATCCTAACATCAGCACACTGCAGTTGATTGTGGTTTACTTGTTGATTGGAGCAACCTCAACACTTTTTTTGCTCTCTAGAGCTCTTTTTGTGGTTGCTTTGGGTCTTCAATCATCAAAATCTTTATTTACGCAATTGCTGAACTCCCTTTTCCGTGCACCTATGTCTTTTTATGACTCTACGCCTCTAGGAAGGATACTGAGTAGGATCTCGAATGATTTAAGTATTGTCGATCTTGATGTTCCATTCAGCTTTGTCTTTGCTTTTGGGGCTACCACAAATGCCTATTCAAATCTTGGAGTATTAGCTGTTGTGACTTGGCAAGTCCTGTTTGTCTCCATACCGATGATCTATGTGGCTATTCGCTTACAGAGATACTACTTTGCCTCTGCAAAAGAGTTGATGCGGATCAATGGTACGACCAAGTCTTTGGTGGCAAACCATCTGGCTGAGTCTATAGCAGGAGCCATGACAATCAGAGCTTTCGAGGAGGAAGAAAGATTCTTTGTAAAGAATATGGACTTCATTGATACAAATGCTAGCCCATTCTTCCACAGTTTTGCTGCAAATGAGTGGTTAATTCAAAGATTGGAAGCACTTAGTGCCATGGTCCTCTCCTCATCGGCTCTCTGCATGATTTTGCTTCCTCCTGGTACTTTTACCGCTGGATTTATTGGAATGGCAATGTCTTATGGTCTCTCATTAAACGTGTCCCTGGTTTTTTCTATTCAAAATCAGTGCATTCTAGCAAATTACATCATTTCTGTAGAAAGGCTAAACCAATACATGCATATACCGAGCGAAGCCCCAGAAGTGATCGAAGGGAGTCGTCCCCCACCCAATTGGCCAGCTGTGGGGAGAGTGGACATACATGATTTACAGATTAGGTATAGACCCGACACACCCCTTGTTCTTCGTGGGATCAACTGCACATTTGAAGGAGGACATAAAATTGGCATCGTTGGACGAACTGGCAGTGGGAAGACTACTCTCATTGGTGCCTTGTTTCGGTTGGTAGAACCAGCAGGAGGAAAGATTATAGTAGATGGCATTGACATCTCTACAATTGGACTTCATGATCTGAGGTCACATTTTGGGATTATTCCTCAAGATCCTACTCTTTTCAATGGCGCCGTGAGATACAATTTGGATCCCTTGTCCCAACACACTGACCATGAAATATGGGAGGTTCTTGGAAAATGTCAGCTTCAGGAGGCTGTCCAGGAAAAGGAAGAGGGTCTAGGCTCCATTGTTGCGGAAGGTGGATCAAACTGGAGCATGGGGCAGAGGCAGCTCTTCTGTTTGGGGCGTGCCCTCTTGCGAAGAAGCCGGATACTGGTTCTTGATGAAGCAACTGCATCGATCGACAATGCAACCGACCTGATTCTGCAGAAAACTATAAGGACCGAGTTTGCAGACTGCACTGTGATCACCGTGGCTCACAGAATACCAACTGTGATGGACTGCACAATGGTTCTTGCCATCAGCGACGGAAAACTAGTTGAGTATGATGAACCAGCAAAGCTAATGAAGAGGGAAGGCTCATTATTTGGACAGCTAGTCAGGGAATACTGGTCCCATTTTCACTCAGCGGAATCACATTGA 4443 0.427 MGDLWTMFCGEPSCLDSGGCSSEFIFFNHPSSCANHALTVCFDILLFVMFLFTMIQRTSSKPVHVPGQFQRFSPLQISSAIFNGCLGLVYLGLGVWILEENLRKTQIVLPLHWWLLPLLQGFTWLLVGLMVSLRGQYLPRSPLRILSILAFLFSGITGVLSIFSAIVYKEASVEIVLNVLSLPGAILLLLCAYKGYKYEETDKIVNGSGLYTPLNGEADGSAKTDSVGDVTPFAKAGFFSSMSFWWLNPLMKRGTKKTLENEDIPKLREEDRAESCYLQFLEELIKQKQIEPSSQPSILRVIILCYWKDIFISGFFALVKILTLSTGPLLLNAFIKVAEGKELFKNEGYVLAMALFVSKNVESLSQRQWYFRSRLIGLRVRSLLTAAIYKKQLRLSNAAKMIHSSGEITNYVTVDAYRIGEFPFWFHQTWTTSLQLCIVLVILFNILGLATFAALVVIILTVLCNAPLAKLQHKFQSKLMVAQDERLRACSEALVNMKVLKLYAWENHFKNVIEKLRNVEYKWLSGVQLRKGYNGFLFWSSPVLVSAATFGACFFLGIPLNASNVFTFVAALRLVQDPIRSIPDVIGVVIQAKVAFARIVKFLEAPELQTSNVRQKSNIENISNAISIKSANFSWEEKLSKSTLRDISLEVRTGEKVAICGEVGSGKSTLLAAILGEIPDVQGTIRVYGRIAYVSQTAWIQTGSIQENILFGSSMDPERYQATLEKCSLVKDLDLLPYGDLTEIGERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTATSLFNEYVMDALSGKTVLLVTHQVDFLPAFDSVLLMSDGEIIQAAPYQQLLVSSQEFVDLVNAHKETAGSERLAEVTPEKFENSVREINKTYTEKQFKAPSGDQLIKQEEREIGDMGFKPYMQYLSQNKGYLFFSLAALSHILFVAGQISQNSWMAANVDNPNISTLQLIVVYLLIGATSTLFLLSRALFVVALGLQSSKSLFTQLLNSLFRAPMSFYDSTPLGRILSRISNDLSIVDLDVPFSFVFAFGATTNAYSNLGVLAVVTWQVLFVSIPMIYVAIRLQRYYFASAKELMRINGTTKSLVANHLAESIAGAMTIRAFEEEERFFVKNMDFIDTNASPFFHSFAANEWLIQRLEALSAMVLSSSALCMILLPPGTFTAGFIGMAMSYGLSLNVSLVFSIQNQCILANYIISVERLNQYMHIPSEAPEVIEGSRPPPNWPAVGRVDIHDLQIRYRPDTPLVLRGINCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKIIVDGIDISTIGLHDLRSHFGIIPQDPTLFNGAVRYNLDPLSQHTDHEIWEVLGKCQLQEAVQEKEEGLGSIVAEGGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDLILQKTIRTEFADCTVITVAHRIPTVMDCTMVLAISDGKLVEYDEPAKLMKREGSLFGQLVREYWSHFHSAESH* 1481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g1106 1480 FunFam ABC transporter C family member 3 1217 1469 - -
Vvi16g1106 1480 ProSitePatterns ABC transporters family signature. 751 765 IPR017871 GO:0005524|GO:0016887
Vvi16g1106 1480 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1236 1468 IPR003439 GO:0005524
Vvi16g1106 1480 CDD ABCC_MRP_domain1 626 826 - -
Vvi16g1106 1480 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 930 1197 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vvi16g1106 1480 FunFam ABC transporter C family member 5 883 1215 - -
Vvi16g1106 1480 SUPERFAMILY ABC transporter transmembrane region 908 1214 IPR036640 GO:0005524|GO:0016020
Vvi16g1106 1480 SMART AAA_5 1260 1452 IPR003593 GO:0016887
Vvi16g1106 1480 SMART AAA_5 653 826 IPR003593 GO:0016887
Vvi16g1106 1480 SUPERFAMILY ABC transporter transmembrane region 299 604 IPR036640 GO:0005524|GO:0016020
Vvi16g1106 1480 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 628 849 IPR003439 GO:0005524
Vvi16g1106 1480 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 311 591 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vvi16g1106 1480 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 233 1468 - -
Vvi16g1106 1480 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1225 1461 IPR027417 -
Vvi16g1106 1480 CDD ABC_6TM_ABCC_D1 312 599 IPR044746 GO:0140359
Vvi16g1106 1480 Pfam ABC transporter 1251 1399 IPR003439 GO:0005524
Vvi16g1106 1480 Pfam ABC transporter 644 778 IPR003439 GO:0005524
Vvi16g1106 1480 CDD ABC_6TM_ABCC_D2 916 1209 IPR044726 GO:0140359
Vvi16g1106 1480 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 620 849 IPR027417 -
Vvi16g1106 1480 Gene3D - 621 855 IPR027417 -
Vvi16g1106 1480 FunFam ABC transporter C family member 10 609 862 - -
Vvi16g1106 1480 Gene3D ABC transporter type 1, transmembrane domain 883 1215 IPR036640 GO:0005524|GO:0016020
Vvi16g1106 1480 Gene3D ABC transporter type 1, transmembrane domain 284 608 IPR036640 GO:0005524|GO:0016020
Vvi16g1106 1480 FunFam ABC transporter C family member 10 294 607 - -
Vvi16g1106 1480 Pfam ABC transporter transmembrane region 919 1160 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vvi16g1106 1480 Pfam ABC transporter transmembrane region 310 576 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vvi16g1106 1480 Gene3D - 1218 1468 IPR027417 -
Vvi16g1106 1480 CDD ABCC_MRP_domain2 1232 1452 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g1106 Vvi-Chr16 19448471 19454630 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g1106 612 891 Calmodulin-binding Proteins AT2G36910 27.723 2.38e-24 109