Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g1102 ATGGGAGTCAAGTCTATTTTCTCGATAATTTTCTTGCTGGGAACAATTTCTTTCCAGGGTTTTGCCGAACCTGTTGAAGATAAACAAGCTTTGCTCGATTTTCTCAATAATATCAATCATTCCCGCACTCTCAATTGGAATGAATACTCCTCCGTCTGCAATACTTGGACTGGAGTGACTTGTAGTGGTGATCATTCAAGGGTTATAGCTCTGCACTTACCCGGAATCGGATTCCGTGGTGAAATCCCTCCAAACACTCTTGGTCAGCTGTCTGCAGTTCAGATTCTGAGTCTTAGATCGAATGCGATTACGAGCCCTTTCCCCTCTGATTTCTCCAAACTCGAAAACTTAACGGCCCTGTATCTTCAGTATAACAAGTTTTCGGGTCCTTTGCCAATTGATTTCTCAGTCTGGAAGAATCTTACCATTATTAATCTCTCAAACAATGGCTTCAATGGTAGTATCCCTTCTTCCATTTCAAAACTGACTCATCTTGCAGCTTTAGATCTCGCTAACAACTCACTTTCAGGAGAAATTCCTGATCTCAATACTTCTAGTTTGCAACACATAAATCTATCCAACAATTTGCTCAATGGCACTTTGCCTCAATCCCTCCGAAGATTCCCCAACTGGGCATTCTCTGGGAACAACATTTCCACAGAAAATGCCATTCCCCCAGTTTTTCCACCTAATAATCCACCATTGAGGAAATCTAAGAAACTCAGTGAACCCGCCTTGTTGGGAATCATACTTGGCGGTTCTGTTGTGGGGTTTGTGTTATTTGCCCTTCTGATGATTGTTTGCTACTCGAAAAGAGACCGGGAAACTGGGTTCATAGTGAAGTCCCAGAAGGGAGAAGGGTCTGTGAAGAAAACTGTTTCTGGGAGCCATGATGGTAGTAACAGGCTTGTGTTCTTTGAGGGTTGTAGTTTTGCATTTGATTTGGAGGATTTGTTAAGGGCCTCTGCTGAAGTTTTGGGTAAGGGAACATTTGGGACAACATATAAGGCAGCTCTGGAGGATGCCACCACTCTGGTGGTCAAAAGATTGAAGGAAGTGAGCCTGGTGAGACGGGATTTTGAGCAGCAGATGCAGATTGTTGGGCAGATAAGGCATGAGAATGTGGCTCCACTAAGGGCTTATTACTATTCCAAGGATGAGAAGCTTATGGTATATGATTTCTACGGTCAAGGAAGTGTATCTTCGATATTGCATGGAAGACGAGGGGATGGTCGGGTTTCGTTAGACTGGGAAACTCGACTCAGAATTGCTCTTGGTGCAGCAAGAGGCATAGCTCATATCCACACAGAGAATGGAGGGAAACTTGTCCATGGAAACATAAAAGCCTCCAACATTTTCCTCAACTCCCGGCGATATGGTTGTGTTTCTGACCTTGGCTTGGGAACACTGATGACCCCAACACCAATGCCTATGACGAGGGCTGCAGGGTACCGAGCCCCAGAGGTGACAGACACCCGAAAAGCGTCTCAAGCATCGGATGTCTACAGCTTTGGGGTCTTGCTCCTTGAGCTTCTAACTGGAAAATCCCCCATTCATAACACCGGTGGTGATGAGGTGATCCACTTGGTGAGATGGGTTAATTCTGTGGTAAGAGAGGAGTGGACCGCAGAAGTGTTCGATGTAGAGCTTTTAAGGTATCCAAATATAGAGGAAGAGATGGTGGAGATGTTACAGATAGGGATGAATTGTGTGGTGAAAATGCCAGAACAAAGACCAAAAATGGCAGAAGTAGTGAAAATGATGGAGAGCATCCAGCAGGTCAATACTGGAAACCGCCCATCCTCTGAAACTAAATCAGAAGTCTCATCTTCAACCCCAACTCCTCCGGCAGCAGCTGAAATGGGTTCCTCCTCTGCCCAACAGTGA 1887 0.4515 MGVKSIFSIIFLLGTISFQGFAEPVEDKQALLDFLNNINHSRTLNWNEYSSVCNTWTGVTCSGDHSRVIALHLPGIGFRGEIPPNTLGQLSAVQILSLRSNAITSPFPSDFSKLENLTALYLQYNKFSGPLPIDFSVWKNLTIINLSNNGFNGSIPSSISKLTHLAALDLANNSLSGEIPDLNTSSLQHINLSNNLLNGTLPQSLRRFPNWAFSGNNISTENAIPPVFPPNNPPLRKSKKLSEPALLGIILGGSVVGFVLFALLMIVCYSKRDRETGFIVKSQKGEGSVKKTVSGSHDGSNRLVFFEGCSFAFDLEDLLRASAEVLGKGTFGTTYKAALEDATTLVVKRLKEVSLVRRDFEQQMQIVGQIRHENVAPLRAYYYSKDEKLMVYDFYGQGSVSSILHGRRGDGRVSLDWETRLRIALGAARGIAHIHTENGGKLVHGNIKASNIFLNSRRYGCVSDLGLGTLMTPTPMPMTRAAGYRAPEVTDTRKASQASDVYSFGVLLLELLTGKSPIHNTGGDEVIHLVRWVNSVVREEWTAEVFDVELLRYPNIEEEMVEMLQIGMNCVVKMPEQRPKMAEVVKMMESIQQVNTGNRPSSETKSEVSSSTPTPPAAAEMGSSSAQQ* 629
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g1102 628 MobiDBLite consensus disorder prediction 589 628 - -
Vvi16g1102 628 Pfam Leucine rich repeat N-terminal domain 26 62 IPR013210 -
Vvi16g1102 628 Pfam Protein tyrosine and serine/threonine kinase 324 587 IPR001245 GO:0004672|GO:0006468
Vvi16g1102 628 PANTHER OS05G0588300 PROTEIN 10 603 - -
Vvi16g1102 628 FunFam Probable inactive receptor kinase RLK902 24 183 - -
Vvi16g1102 628 Gene3D Phosphorylase Kinase; domain 1 287 394 - -
Vvi16g1102 628 Pfam Leucine rich repeat 81 127 IPR001611 GO:0005515
Vvi16g1102 628 SUPERFAMILY Protein kinase-like (PK-like) 324 589 IPR011009 -
Vvi16g1102 628 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 395 602 - -
Vvi16g1102 628 FunFam pollen receptor-like kinase 1 289 394 - -
Vvi16g1102 628 ProSitePatterns Protein kinases ATP-binding region signature. 326 348 IPR017441 GO:0005524
Vvi16g1102 628 Gene3D Transferase(Phosphotransferase) domain 1 396 612 - -
Vvi16g1102 628 Pfam Leucine Rich Repeat 140 162 IPR001611 GO:0005515
Vvi16g1102 628 Pfam Leucine Rich Repeat 186 206 IPR001611 GO:0005515
Vvi16g1102 628 Gene3D Ribonuclease Inhibitor 25 248 IPR032675 -
Vvi16g1102 628 SUPERFAMILY L domain-like 38 211 - -
Vvi16g1102 628 ProSiteProfiles Protein kinase domain profile. 320 591 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g1102 Vvi-Chr16 19366109 19368456 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g1102 16 615 Receptor kinase-like Gene Family AT4G23740 60.480 0.0 741
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Vvi16g1102 PK_Tyr_Ser-Thr 4.4e-32 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g1102 - - vvi:100243368 1179.85