Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g1099 ATGGACCAGAGTTTGTTATATCCGATCAAGTACACTGAGCATCGGAGCATTACTAATAAGCAGACAAGACAGAGTCGGAGGCCGCCGGAGCAAAACTCCGGCGTGCCCAGAGTTGTTCGGATATCAGTCACCGACCCTGATGCTACAGACTCCTCCAGCGATGAAGAGGATGAGCTTTTTAGTCGTCAGCGCGTGAAGAGATACACAAACGAGATCAACATTGCTACGGTGTCTAAAAGCATCGCTCCGGTGGCCGGGCGCAAGAGGGGTGCCGGAGCGGGAGAGATGGCTCCCTGCCGGAGACCTATGAAGGTGGCCGCGCCGACGAACGGACGGAAGTTCCGTGGAGTCCGGCAACGGCCGTGGGGGAAGTGGGCGGCGGAGATTAGAGATCCGGCGAGACGTGTACGCCTCTGGCTGGGCACGTACGACACCGCCGAGGAGGCAGCAATGGTGTACGACAACGCGGCAATCAAGCTACGTGGGCCCGACGCTCTCACTAACTTTGTCACACCTCCGCCGCCCCCTAAGCCGGAAATAAATCTCACTGCTGTTTCCGGCTACGAATCCGGCGACGAGTCCCGCAACCTCTCATCTCCCACCTCCGTCTTGCACTTCAGAACCCACTCCTCCTCAACCGACGAAGCCGAGCCGTCGAACCGCTCCGACCCCGTTCACGAAACCGAATCCTCCGAGCCAGTCCAGAACCCCGAAACCCATCAACAACAACCGGTTCAACCGGTTCGAGAGGAGTGCCAAGGAGAAACGACAAATACAGGGGATTCCTCCGTGGATTATCTACCTATGGACCTGCCATTTATAAACGATATGTTCAATTTCGAAGCTCCGGGTTCAATCTTTGAAGACACTTCAATACTACCAGAAAGCATATTGAACGAAGATTTCAGTGACATGTTTTTAGACAGTCCGATAAATTTCGACATATCATCATCGTGGCGATTAGAGGACGATTATTTTCAAGACATCGGAGATTTATTTACCTCTGATTCACTTTCAGTTCTCTGA 1026 0.5341 MDQSLLYPIKYTEHRSITNKQTRQSRRPPEQNSGVPRVVRISVTDPDATDSSSDEEDELFSRQRVKRYTNEINIATVSKSIAPVAGRKRGAGAGEMAPCRRPMKVAAPTNGRKFRGVRQRPWGKWAAEIRDPARRVRLWLGTYDTAEEAAMVYDNAAIKLRGPDALTNFVTPPPPPKPEINLTAVSGYESGDESRNLSSPTSVLHFRTHSSSTDEAEPSNRSDPVHETESSEPVQNPETHQQQPVQPVREECQGETTNTGDSSVDYLPMDLPFINDMFNFEAPGSIFEDTSILPESILNEDFSDMFLDSPINFDISSSWRLEDDYFQDIGDLFTSDSLSVL* 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g1099 341 SUPERFAMILY DNA-binding domain 113 170 IPR016177 GO:0003677
Vvi16g1099 341 ProSiteProfiles AP2/ERF domain profile. 113 170 IPR001471 GO:0003700|GO:0006355
Vvi16g1099 341 CDD AP2 113 169 IPR001471 GO:0003700|GO:0006355
Vvi16g1099 341 FunFam Ethylene-responsive transcription factor 2 112 171 - -
Vvi16g1099 341 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 36 240 - -
Vvi16g1099 341 SMART rav1_2 113 176 IPR001471 GO:0003700|GO:0006355
Vvi16g1099 341 MobiDBLite consensus disorder prediction 188 209 - -
Vvi16g1099 341 Gene3D AP2/ERF domain 112 171 IPR036955 GO:0003700|GO:0006355
Vvi16g1099 341 MobiDBLite consensus disorder prediction 188 264 - -
Vvi16g1099 341 MobiDBLite consensus disorder prediction 210 228 - -
Vvi16g1099 341 PRINTS Ethylene responsive element binding protein signature 136 152 IPR001471 GO:0003700|GO:0006355
Vvi16g1099 341 PRINTS Ethylene responsive element binding protein signature 114 125 IPR001471 GO:0003700|GO:0006355
Vvi16g1099 341 Pfam AP2 domain 113 162 IPR001471 GO:0003700|GO:0006355
Vvi16g1099 341 MobiDBLite consensus disorder prediction 1 60 - -
Vvi16g1099 341 MobiDBLite consensus disorder prediction 229 264 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g1099 Vvi-Chr16 19332709 19333734 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g1099 1 340 AP2-EREBP Transcription Factor Family AT4G27950 43.575 4.43e-69 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vvi16g1099 AP2 6.5e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g1099 - - vvi:100248494 664.84