Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g1087 ATGGGGGACTTATGGACTCTGTTTTGTGGGGAATCTAACTGTTCAGACACCGGTAGGAGGACAAGCAGTTTCAGTTTTGCAGTTTTTGCCAGCCCATCCTCATGTATCAACCATGCATTCCTAGTTTGCTTTGATATCCTGCTCTTAGCAATGTTTGTATCCAATATGATTCAGAAAGCATTATCAAAAAGAGTTCGCATTCCACCTCGATTTCAAGGCTTTTCACCATTGCAGATAATATCTGCAGTCTTTAATGGTTGTCTTGGATCAGTATACTTGAGCTTAGGCATTTGGATTTTGGAAGAGAAGTTGAGGAAAACCCACTCTGTTTTTCCTCTTCATTGGTGGATACTACTTCTGTTTCATGGATTCACATGGTTGATCCTGGCTTTAATTGTGAGCCTTTGGGGAAGACATCTTTCAAAAGCCCCATTTCGGGTTTTATCCATTTTTGCCTTCCTGTTGGCAGGAACTATCTGTGTTTTCTCTCTTTCCCCTGCCATTGTCAACAAAGAAGTTTCACTCAAAACAACTTTGGATGTTCTTTCTTTTCCTGGAGCAAGTTTATTGATAGCATGTGTTTTCAAGGATTACAAAGATGATGAGAGTGAGGAGACTGTTAATGGAAGTGGCCTATACACTCCTCTGAAGGAAGAGACTCCTGGCAACAGTGAAGCTGATTCTGGTAGCTTTGCTACTCCATTTGCCACTGCTGGATTCTTCAGCAGGATGTTTTTTTGGTGGTTGAACCCTTTAATGAGAAAGGGTACCGAGAAGATTTTAGAAGAAGAAGATATACCTAAGTTGCGTGAGGTAGATCAAGCAAAAAACTGCTACTTGCAGTTCTTGGAGCAACTGCACAAACAGCAACAGAATCAGACATTGTCTCATGCATCAATCTTGAGGACAATTATTTCATGCCACTGGAAAGAGATTTTCATTTCTGGTTTCTTTGCACTGCTGAAGACACTCTCTCTGTTGACTGGTCCTCTACTTCTTAAGGCCTTTGTTGAGGTTGCAGAAGATCAAAAAAATTTTACATTTGAGGGCTGTGTGTTGGCCTTATCACTTTTCTTTGGGAAGACCATAGAATCCTTATCCGAAAGGCAGTGGTACTTTCGCAGCAGGATTACTGGTATGAGGGTAAGGTCTACTCTAACAGCAGTCATTTACAAGAAGCAACTGAGATTATCCAATGCTGCTAAAATGGTGCACTCACCAGGAGAAATAACAAACTATGTTACAGTAGATGCTTATAGAATTGGAGAATTCCCTTTCTGGTTTCATCAGACATGGACAACAATCCTTCAGCTCTGCGTAGCACTAGTTATTCTCTTCCAAGCGGTGGGGTTCGCAACAGTTGCAGCCATGGTGGTAATAGTTCTAACGGTACTCTGCAATGTGCCCCTTGCCAAATTACAGCACAAGTTACAGACTAAGTTCATGGCTGCACAGGCTCAGAGGGTGAAGGCTAGTTCTGAGGCTCTTGTGAACATGAAGGTGTTGAAATTATATGCCTGGGAAACCCACTTCGAGAATGTGATAGAAGCTTTAAGGAATGTCGAGCTCAAATGCCTGTCGAGGGTGCAGCTGCTAAAAGCATATTATTCATTCGTCTTCTATGCATCCCCTATACTGATCTCTGGTGCCACTTTCGGGGCATGCTATTTTCTTGGAGTTCCTCTATATGCTAGCAATGTTTTCACCTTTATAGCAACTCTACGGCTTGTTCAAGACCCTGTTAGATTTATCCCTGATGTTATTGGGGTGGTTATTCAAGCAAAAATTGCATTCTCACGGATTGTGCAGTTTCTTGAGGCACCTGAGTTGCACAGTGGGAATGTCCAGAAGAAGAATAGCATGGAGATTGTAGATCACTCTATTCTAATAAACTCGGCCAATTTTTCATGGGATGAGAGTCTATCAGAGCTGACACTAAGAAGCATCAACCTAGAGGTTAGACCTGGTGAAAAAGTCGCTATATGTGGAGAAGTCGGCTCAGGCAAGTCAACCCTTCTGGCGGCAATTCTAGGGGAGGTTCCTAATACTCAGGGAACTATACAAGTCCGTGGGAAGATTGCTTATGTTTCTCAGACAGCATGGATTCAGACAGGAACTATACAAGAGAATATTCTTTTTGGGTCTGAAATGGATACTCAAAGATACCATGAAGCACTTGAGAGTAGTTCATTGGTAAAGGACCTTGAGATGTTCCCCCATGGTGAACTCACTGAAATAGGTGAAAGAGGAGTTAATCTAAGTGGTGGGCAGAAGCAGCGGATTCAACTGGCTCGTGCACTCTACCAGGATGCCGATATATATCTCTTGGATGACCCATTCAGTGCAGTTGATGCACATACTGCAACGAGTCTACTGAATGAATATGTAATGAGAGCACTATCAGGGAAGACAGTCCTACTTGTGACCCACCAAGTTGATTTTCTTCCTGCTTTTGGTTCTGTTTTGTTAATGTCAGATGGGAAAATCCTACATGCAGCTCCTTATCATCAGCTATTGACGTCAAGCCAAGAATTTCAGGACTTCGTGAATGCACACCAACAGACTGCTGGTTCTGAAAGGCTTACAGAGGTTGCTCTACCCAGGAGATGTGAAACATCTACTGGAGAGATCAAGAGAACTCACATTGAGAGAGAATTTAATGCGTCTGGACATGATCAATTAATCAAGCAAGAAGAGAGAGAAATAGGAAACCCAGGTTTTAAGCCCTACATGCTGTATCTAAATCAAAATAAGCAATTCTGGCTCTTCCCCATAGGTGTTCTCTGTAACATTGTGTTTAGTGTTGGTCTGACATTACAGAATGTTTGGATGGCTACTAATGTTGAAAATAGTAATGTTAGTACCTCGCAGCTCATTGTGGTTTACTTGTCAATTGGATGTACCTCAACAGTGTTCTTGCTCTGTAGAACTCTTTTGATGGTTTCCTTGGGCCTTCAATCATCAAAATCTCTATTAGCACAGCTATTAAACTCCTTTTTTCGGGCACCCATGTCTTTTTATGACTCCACACCTCTAGGAAGGATGATAAGTCGTGTTTCATCAGATTTGAATATCATCGATCTTGATCTCTTGTTTGGCATAGTCTATACTGTTTCAAGCACAGCAGCTGTTTGTGTCATTCTTGGAGTACTGGCTGCAGTCACCTGGCAAGTCCTATTGGTTTCCATACCTACAATTTATCTAGCAATGCGGTTACAGAAATACTACTACGCCTCTGCAAAAGAGATGATGCGGATCAATGGCACAACCAAGTCTTTGGTAGCAAACCATCTAGCTGAATCCGTAGCAGGAGCTATGGTAATAAGAGCATTTGAGCAAGAAGACAGATTTTTTGCAAAGATTCTGCACTTAATTGACACAAATGCCAGTCCATTCTTCCACGCTTTTGCAGCAAATGAGTGGTTGATTCAGTGGTTGGTGACGCTCTCTGCAACTATTCTCTCATCTTCTGCTCTCTGCATGGTTTTGCTTCCTAAAGGAACTTGTAGCCCTGGGTTCATTGGAATGGCTCTATCTTATGGGTTATCATTAAACTTGTCCCTGGTTAACAGTACTCGAAACATATGCACTCTAGAAAATTACATCATTTCTGTAGAGAGGCTTAACCAATACATGCATATACCAAGTGAAGCCCCTGAAGTGATACACAATAATCGTCCTCCACCCAATTGGCCTGATGTGGGTAAAGTTGAGATTCAGAAGTTGCAGATCAGGTATAGGCCCAACTTGCCACTAGTTCTTCGTGGGATCGATTGTATATTTGAAGGAGGGCACAAGATTGGTATTGTTGGCCGGACTGGCAGTGGGAAGACCACGCTCATAAGCGCTCTATTTCGCCTTGTGGAGCCAGCAGGAGGGAGGATTATAGTAGATGGCCTTGATATCTCTATGATTGGACTTCATGATCTACGTTCACGTTTTGGGATTATACCTCAAGATCCTACTCTTTTTAATGGGACTGTAAGATACAATTTGGATCCCTTGTCTCAGCATACCGAGCAAGAAATATGGGAGGTTCTTGCTAAGTGTCAACTTCAAGAGACCGTTCAGGATAAAGAAGAGGGCCTAGACTCCATGGTTGTAGAAGATGGATCAAATTGGAGCATGGGGCAAAGGCAATTGTTTTGTTTGGGACGTGCTCTATTGAGGAGGAGCCGAATACTGGTTCTTGATGAAGCAACAGCATCAATTGACAATGCAACTGACTTAATTCTACAGAAAACCATTCGGACTGAATTTGCAAATTGCACTGTGATCACAGTGGCTCACAGAATACCAACTGTGATGGATTGCACCATGGTTCTTGCAATCAGTGATGGAAAACTGGTAGAGTATGACAAGCCAACAGATTTGATGAAGAAAGAAGGATCCTTGTTTGGGCAGCTTGTCAAGGAATACTGGTCTCATTTTCACTCTGCTGATTCATATTGA 4452 0.4236 MGDLWTLFCGESNCSDTGRRTSSFSFAVFASPSSCINHAFLVCFDILLLAMFVSNMIQKALSKRVRIPPRFQGFSPLQIISAVFNGCLGSVYLSLGIWILEEKLRKTHSVFPLHWWILLLFHGFTWLILALIVSLWGRHLSKAPFRVLSIFAFLLAGTICVFSLSPAIVNKEVSLKTTLDVLSFPGASLLIACVFKDYKDDESEETVNGSGLYTPLKEETPGNSEADSGSFATPFATAGFFSRMFFWWLNPLMRKGTEKILEEEDIPKLREVDQAKNCYLQFLEQLHKQQQNQTLSHASILRTIISCHWKEIFISGFFALLKTLSLLTGPLLLKAFVEVAEDQKNFTFEGCVLALSLFFGKTIESLSERQWYFRSRITGMRVRSTLTAVIYKKQLRLSNAAKMVHSPGEITNYVTVDAYRIGEFPFWFHQTWTTILQLCVALVILFQAVGFATVAAMVVIVLTVLCNVPLAKLQHKLQTKFMAAQAQRVKASSEALVNMKVLKLYAWETHFENVIEALRNVELKCLSRVQLLKAYYSFVFYASPILISGATFGACYFLGVPLYASNVFTFIATLRLVQDPVRFIPDVIGVVIQAKIAFSRIVQFLEAPELHSGNVQKKNSMEIVDHSILINSANFSWDESLSELTLRSINLEVRPGEKVAICGEVGSGKSTLLAAILGEVPNTQGTIQVRGKIAYVSQTAWIQTGTIQENILFGSEMDTQRYHEALESSSLVKDLEMFPHGELTEIGERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTATSLLNEYVMRALSGKTVLLVTHQVDFLPAFGSVLLMSDGKILHAAPYHQLLTSSQEFQDFVNAHQQTAGSERLTEVALPRRCETSTGEIKRTHIEREFNASGHDQLIKQEEREIGNPGFKPYMLYLNQNKQFWLFPIGVLCNIVFSVGLTLQNVWMATNVENSNVSTSQLIVVYLSIGCTSTVFLLCRTLLMVSLGLQSSKSLLAQLLNSFFRAPMSFYDSTPLGRMISRVSSDLNIIDLDLLFGIVYTVSSTAAVCVILGVLAAVTWQVLLVSIPTIYLAMRLQKYYYASAKEMMRINGTTKSLVANHLAESVAGAMVIRAFEQEDRFFAKILHLIDTNASPFFHAFAANEWLIQWLVTLSATILSSSALCMVLLPKGTCSPGFIGMALSYGLSLNLSLVNSTRNICTLENYIISVERLNQYMHIPSEAPEVIHNNRPPPNWPDVGKVEIQKLQIRYRPNLPLVLRGIDCIFEGGHKIGIVGRTGSGKTTLISALFRLVEPAGGRIIVDGLDISMIGLHDLRSRFGIIPQDPTLFNGTVRYNLDPLSQHTEQEIWEVLAKCQLQETVQDKEEGLDSMVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDLILQKTIRTEFANCTVITVAHRIPTVMDCTMVLAISDGKLVEYDKPTDLMKKEGSLFGQLVKEYWSHFHSADSY* 1484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g1087 1483 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 313 593 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vvi16g1087 1483 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 235 1471 - -
Vvi16g1087 1483 SUPERFAMILY ABC transporter transmembrane region 918 1217 IPR036640 GO:0005524|GO:0016020
Vvi16g1087 1483 SUPERFAMILY ABC transporter transmembrane region 301 606 IPR036640 GO:0005524|GO:0016020
Vvi16g1087 1483 MobiDBLite consensus disorder prediction 204 227 - -
Vvi16g1087 1483 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1227 1464 IPR027417 -
Vvi16g1087 1483 CDD ABC_6TM_ABCC_D1 339 601 IPR044746 GO:0140359
Vvi16g1087 1483 CDD ABC_6TM_ABCC_D2 923 1212 IPR044726 GO:0140359
Vvi16g1087 1483 Gene3D ABC transporter type 1, transmembrane domain 885 1218 IPR036640 GO:0005524|GO:0016020
Vvi16g1087 1483 Pfam ABC transporter 1255 1402 IPR003439 GO:0005524
Vvi16g1087 1483 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 621 851 IPR027417 -
Vvi16g1087 1483 Pfam ABC transporter 646 780 IPR003439 GO:0005524
Vvi16g1087 1483 FunFam ABC transporter C family member 10 296 609 - -
Vvi16g1087 1483 SMART AAA_5 1263 1456 IPR003593 GO:0016887
Vvi16g1087 1483 SMART AAA_5 655 828 IPR003593 GO:0016887
Vvi16g1087 1483 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1239 1471 IPR003439 GO:0005524
Vvi16g1087 1483 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 925 1200 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vvi16g1087 1483 Gene3D - 603 878 IPR027417 -
Vvi16g1087 1483 Gene3D ABC transporter type 1, transmembrane domain 301 602 IPR036640 GO:0005524|GO:0016020
Vvi16g1087 1483 Pfam ABC transporter transmembrane region 926 1177 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vvi16g1087 1483 Pfam ABC transporter transmembrane region 312 577 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vvi16g1087 1483 FunFam ABC transporter C family member 3 1220 1472 - -
Vvi16g1087 1483 Gene3D - 1220 1472 IPR027417 -
Vvi16g1087 1483 FunFam ABC transporter C family member 5 886 1218 - -
Vvi16g1087 1483 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 630 851 IPR003439 GO:0005524
Vvi16g1087 1483 CDD ABCC_MRP_domain1 628 828 - -
Vvi16g1087 1483 CDD ABCC_MRP_domain2 1235 1455 - -
Vvi16g1087 1483 FunFam ABC transporter C family member 10 611 864 - -
Vvi16g1087 1483 ProSitePatterns ABC transporters family signature. 753 767 IPR017871 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g1087 Vvi-Chr16 19219262 19225074 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g1087 477 841 Calmodulin-binding Proteins AT2G36910 26.277 2.85e-25 112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g1087 K05666 - vvi:100260363 2888.98