Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g1065 ATGATTTTATTAATATTATTTTTTCTTCTTGCAGATGGATCACAAAAAAAACTGGTTACAGGTTTAATCCTTGGTTTCTTTCTTCTCGTGTTTGTAGTAATTACACTCTATTATGTATATAACTCAAATAAACTTGATAGAGAAAATACCAGAAAGATTGAAAAGTTTTTGGAAGATTACAAAGCTCTCAATCCCTCAAGATACTCCTATGTTGATATTAAAAAGATCACAAATCACTTCAAGGACAAATTAGGTCAAGGAGGTTATGGATCAGTGTACAAAGGAAAGCTTTCCAATGAAGTTCTTGTTGCAGTAAAGATCCTTAACGATTCCAAAGGCAATGGAGAAGAGTTCATTAATGAAGTGGGAACAATGAGTAGAATTCATCATGTCAATGTAGTTCGCTTGGTTGGATTCTGTGCTGATGGAGTTAAACGAGCTTTGATTTATGAGTTCTTACCAAATGAGTCTTTAGAGAAATTCATATTTCCAACACCCATTAAGAACCATTCACTTGGTTGGGAGAAGCTTCAAGACATTGCTATGGGCATAGCCAAAGGAATTGAGTATCTTCATCAAGGTTGTGAACAAAGAATTCTTCATTTTGATATCAAACCTCATAACATTTTGCTCGATCAAAACTTCAATCCAAAAATATCTGATTTTGGTCTTGCCAAATTATGTTCTAAGGAACAAAGTGCAATTTCAATGACTGCAGCAAGGGGGACAATGGGTTACATTGCACCAGAAGTGATATCTAGGAACTTTGGGAATGTGTCTTATAAGTCAGATGTTTATAGTTTTGGAATGCTGTTACTTGGAATGGTAGGGGGAAGGAAAAATATTGATGTTACAGTTGAGAACACTAGCCAAGTATACTTCCCAGAATGGGTTTATACCCAATTAGATCAAAGGGAGGAAGTGCATATTCGGATTGAGAAAGAAGGAGATACCAAAATTGCAAAGAAGTTAACTATTGTGGGACTTTGGTGCATTCAATGGTATCCAATAGATCGCCCTTCTATGAAAGTTGTTGTTCAAATGTTGGAAGGAACAGGAGACAATTTAACCATGCCTCCCAATCCTTTTGCCTCCATAGGTCCAACAAAAACAAACATCAAAAGGCCCAAAAAATCTCTTCAACAAGAGTTGACAGTTGTTCCAGAATTAGATTGA 1176 0.3571 MILLILFFLLADGSQKKLVTGLILGFFLLVFVVITLYYVYNSNKLDRENTRKIEKFLEDYKALNPSRYSYVDIKKITNHFKDKLGQGGYGSVYKGKLSNEVLVAVKILNDSKGNGEEFINEVGTMSRIHHVNVVRLVGFCADGVKRALIYEFLPNESLEKFIFPTPIKNHSLGWEKLQDIAMGIAKGIEYLHQGCEQRILHFDIKPHNILLDQNFNPKISDFGLAKLCSKEQSAISMTAARGTMGYIAPEVISRNFGNVSYKSDVYSFGMLLLGMVGGRKNIDVTVENTSQVYFPEWVYTQLDQREEVHIRIEKEGDTKIAKKLTIVGLWCIQWYPIDRPSMKVVVQMLEGTGDNLTMPPNPFASIGPTKTNIKRPKKSLQQELTVVPELD* 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g1065 391 PANTHER RUST RESISTANCE KINASE LR10-RELATED 50 370 IPR045874 GO:0004672
Vvi16g1065 391 Gene3D Phosphorylase Kinase; domain 1 51 152 - -
Vvi16g1065 391 ProSiteProfiles Protein kinase domain profile. 78 364 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi16g1065 391 FunFam serine/threonine-protein kinase PBS1-like 46 152 - -
Vvi16g1065 391 ProSitePatterns Protein kinases ATP-binding region signature. 84 106 IPR017441 GO:0005524
Vvi16g1065 391 MobiDBLite consensus disorder prediction 359 379 - -
Vvi16g1065 391 Gene3D Transferase(Phosphotransferase) domain 1 153 356 - -
Vvi16g1065 391 FunFam PR5-like receptor kinase 153 360 - -
Vvi16g1065 391 ProSitePatterns Serine/Threonine protein kinases active-site signature. 199 211 IPR008271 GO:0004672|GO:0006468
Vvi16g1065 391 MobiDBLite consensus disorder prediction 359 380 - -
Vvi16g1065 391 SMART serkin_6 78 349 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi16g1065 391 Pfam Protein kinase domain 80 347 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi16g1065 391 SUPERFAMILY Protein kinase-like (PK-like) 60 351 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g1065 Vvi-Chr16 19038205 19039503 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g1065 58 371 Receptor kinase-like Gene Family AT1G66910 52.188 3.57e-113 343
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Vvi16g1065 Pkinase 5.5e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g1065 - - vvi:100250224 734.561