Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g1062 ATGACCAATAATTTTAAAAATAAATTAGGTCAAGGCGGCTTTGGCTCTGTATACAAAGGTAAACTTCGAAGTGGTCAAATTGTAGCAGTAAAAATGTTGGTCATATCAAAAGCTAATGGGCAAGATTTCATTAATGAAGTTGCTACAATTGGAAGGATTCATCATATTAATGTGGTACGACTTGTTGGATTTTGTGTGGAAGGATCAAAATGGGCCCTCATATATGACTTCATGTCGAATGGGTCTCTTGACAAGTTTATCTTCCTCAAAGGAGAAAAGAGCATTCCTTTAAGTTGGGAAAGATTGTACAAGATTGCACTTGGGGTAGGGCGTGGAATTGAATACTTACACCAAGGGTGTGACATGCAAATTCTACATTTTGATATCAAGCCGCACAATATTCTTTTGGATGAAGACTTTACTCCAAAAGTTTCAGACTTTGGCCTTGCAAAATTATATTCAACAGATGAAAGTATTGTGTCTCTCACTGCAGCTCGAGGAACATTAGGATACATTGCTCCAGAATTGTTCTATAAAAACATTGGGCATGTGTCATATAAGGCTGATGTTTATAGTTTTGGAATGTTGTTAATGGAGATGGTGGGAAAACGGAGGCATGTGAGTGCACATGAAGAAAATCTAAGTGAGATATTCTTCCCATCATGGATTTATGACCAAATTGAACAAGGTGGACATATGGAAATGGGCGATGCCACAGAGGATGAAAAGAAATATATGAGAAAAATGATCATAGTTGCATTATGGTGTGTGCAAATGAAGCCCATAGACCGCCCTTCTATGAGCAAAGCACTAAATATGCTTGAAGGTGACATTGAAATCTTGCAAATGCCTCCTAAGCCTACTCTATATTCCCATGAAATGTCAACTCAAGATCGGCAGAACAACCCAATGGGGGATCTAATTTCCTTATGTAATGCAAGTATTACAATTAGCTTATATGGAAGGTAA 969 0.3767 MTNNFKNKLGQGGFGSVYKGKLRSGQIVAVKMLVISKANGQDFINEVATIGRIHHINVVRLVGFCVEGSKWALIYDFMSNGSLDKFIFLKGEKSIPLSWERLYKIALGVGRGIEYLHQGCDMQILHFDIKPHNILLDEDFTPKVSDFGLAKLYSTDESIVSLTAARGTLGYIAPELFYKNIGHVSYKADVYSFGMLLMEMVGKRRHVSAHEENLSEIFFPSWIYDQIEQGGHMEMGDATEDEKKYMRKMIIVALWCVQMKPIDRPSMSKALNMLEGDIEILQMPPKPTLYSHEMSTQDRQNNPMGDLISLCNASITISLYGR* 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g1062 322 ProSitePatterns Serine/Threonine protein kinases active-site signature. 124 136 IPR008271 GO:0004672|GO:0006468
Vvi16g1062 322 FunFam PR5-like receptor kinase 78 286 - -
Vvi16g1062 322 SUPERFAMILY Protein kinase-like (PK-like) 4 275 IPR011009 -
Vvi16g1062 322 Gene3D Phosphorylase Kinase; domain 1 1 77 - -
Vvi16g1062 322 Pfam Protein kinase domain 6 272 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi16g1062 322 ProSiteProfiles Protein kinase domain profile. 3 281 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi16g1062 322 ProSitePatterns Protein kinases ATP-binding region signature. 9 31 IPR017441 GO:0005524
Vvi16g1062 322 PANTHER RUST RESISTANCE KINASE LR10-RELATED 1 295 IPR045874 GO:0004672
Vvi16g1062 322 SMART serkin_6 3 274 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi16g1062 322 Gene3D Transferase(Phosphotransferase) domain 1 78 283 - -
Vvi16g1062 322 CDD STKc_IRAK 9 276 - -
Vvi16g1062 322 PIRSF ILK 2 283 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g1062 Vvi-Chr16 19003897 19004865 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g1062 1 298 Receptor kinase-like Gene Family AT5G38280 53.135 9.60e-113 339
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Vvi16g1062 Pkinase 5.6e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g1062 - - vvi:100260469 654.055