Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g1061 ATGTTGGTCATATCAAAAGCTAATGGGCAAGATTTCATTAATGAAGTTGCTACAATTGGAAGGATTCATCATATTAATGTGGTACGACTTGTTGGATTTTGTGTGGAAGGATCAAAATGGGCCCTCATATATGACTTCATGTCGAATGGGTCTCTTGACAAGTTTATCTTCCTCAAAGGAGAAAAGAGCATTCCTTTAAGTTGGGAAAGATTGTACAAGATTGCACTTGGAGTAGGGCGTGGAATTGAATACTTACACCAAGGGTGTGACATGCAAATTCTACATTTTGATATCAAGCCGCACAATATTCTTTTGGATGAAGACTTTACTCCAAAAGTTTCAGACTTTGGCCTTGCAAAATTATATTCAACAGATGAAAGTATTGTGTCTCTCACTGCAGCTCGAGGAACATTAGGATACATTGCTCCAGAATTGTTCTATAAAAACATTGGGCATGTGTCATATAAGGCTGATGTTTATAGTTTTGGAATGTTGTTAATGGAGATGGTGGGAAAACGGAGGCATGTGAGTGCACATGAAGAAAATCTAAGTGAGATATTCTTCCCATCATGGATTTATGACCAAATTGAACAAGGTGGACATATGGAAATGGGCGATGCCACAGAGGATGAAAAGAAATATATGAGAAAAATGATCATAGTTGCATTATGGTGTGTGCAAATGAAGCCCATAGACCGCCCTTCTATGAGCAAAGCACTAAATATGCTTGAAGGTGACGTTGAAATCTTGCAAATGCCTCTTAAGCCTACTCTATATTCCCATGAAATGTCAACTCAAGATCGGCAGAACAACCCAATGGGGGATCTAATTTCCTTATGTAATGCAAGTATTACAATTAGCTTATATGGAAGGTAA 876 0.3801 MLVISKANGQDFINEVATIGRIHHINVVRLVGFCVEGSKWALIYDFMSNGSLDKFIFLKGEKSIPLSWERLYKIALGVGRGIEYLHQGCDMQILHFDIKPHNILLDEDFTPKVSDFGLAKLYSTDESIVSLTAARGTLGYIAPELFYKNIGHVSYKADVYSFGMLLMEMVGKRRHVSAHEENLSEIFFPSWIYDQIEQGGHMEMGDATEDEKKYMRKMIIVALWCVQMKPIDRPSMSKALNMLEGDVEILQMPLKPTLYSHEMSTQDRQNNPMGDLISLCNASITISLYGR* 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g1061 291 Pfam Protein kinase domain 8 241 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi16g1061 291 PIRSF ILK 2 252 - -
Vvi16g1061 291 Gene3D Transferase(Phosphotransferase) domain 1 51 252 - -
Vvi16g1061 291 PANTHER RUST RESISTANCE KINASE LR10-RELATED 6 264 IPR045874 GO:0004672
Vvi16g1061 291 SMART serkin_6 1 243 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi16g1061 291 ProSiteProfiles Protein kinase domain profile. 1 250 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi16g1061 291 FunFam PR5-like receptor kinase 47 255 - -
Vvi16g1061 291 SUPERFAMILY Protein kinase-like (PK-like) 6 244 IPR011009 -
Vvi16g1061 291 Gene3D Phosphorylase Kinase; domain 1 1 50 - -
Vvi16g1061 291 ProSitePatterns Serine/Threonine protein kinases active-site signature. 93 105 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g1061 Vvi-Chr16 18992913 18993788 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g1061 1 267 Receptor kinase-like Gene Family AT5G38280 50.923 1.29e-96 296
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Vvi16g1061 Pkinase 3e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g1061 - - vvi:100853070 591.652