Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g1055 ATGAATTTAAGTTACCACGATTTGCAGCGTAGAACTGGCAATTTGCACAGGGTTTGGGAGTGTATACAAGATGGGACATTGGTTGCAGTGAAGAAGCTTGACAAGCCTCTTAGGAAGAAGGAATTCATAACTGAAGTGAACACTATTGGCTCTATGCATCGCATGAACCTGGTTCGACTCTGCGGCTACTGCTCAGAAGGCTCTCAACAGCTTCTGGTTTATGAGTTCATGAAAAACGGTTTCTTAGACAAGTGGATATTTCCCTCAAAGCATTGCCGGGACAGATTGCTAGATTGGGGAACTCGCTTCCATATAGCCATTGCTACTGCACAAGGGATTGCTTATTTTCATGAGCAGTGCAGGAACCGGATCATCCACTGTGATATCAAGCCCGAAAACATACTTCTAGATGAGAATTTCTGTCCAAAAGTTTTAGACTTTGGACTAGCAAAGCTGATGGGCAGAGAGCATTGA 474 0.4388 MNLSYHDLQRRTGNLHRVWECIQDGTLVAVKKLDKPLRKKEFITEVNTIGSMHRMNLVRLCGYCSEGSQQLLVYEFMKNGFLDKWIFPSKHCRDRLLDWGTRFHIAIATAQGIAYFHEQCRNRIIHCDIKPENILLDENFCPKVLDFGLAKLMGREH* 158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g1055 157 PANTHER OS07G0415500 PROTEIN 4 156 - -
Vvi16g1055 157 FunFam Uncharacterized protein 11 77 - -
Vvi16g1055 157 ProSitePatterns Serine/Threonine protein kinases active-site signature. 124 136 IPR008271 GO:0004672|GO:0006468
Vvi16g1055 157 Gene3D Transferase(Phosphotransferase) domain 1 78 157 - -
Vvi16g1055 157 ProSiteProfiles Protein kinase domain profile. 1 157 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi16g1055 157 Pfam Protein kinase domain 13 155 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi16g1055 157 SMART serkin_6 5 156 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi16g1055 157 FunFam Protein kinase superfamily protein 77 152 - -
Vvi16g1055 157 Gene3D Phosphorylase Kinase; domain 1 11 77 - -
Vvi16g1055 157 SUPERFAMILY Protein kinase-like (PK-like) 13 155 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g1055 Vvi-Chr16 18910683 18911407 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g1055 22 152 Receptor kinase-like Gene Family AT1G66980 47.727 2.74e-38 136
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Vvi16g1055 Pkinase 3.9e-25 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g1055 - - vvi:100243904 275.789