Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g1052 ATGGGTACAAGCCCCTTTCGATATTTTATTTCCTTTTTTCTGCTTATGCTATGTTTTGAAGCCTGTTTGAGGGTGGGTGATGCTAAAGTTGGGTGCAGAGAGAGGGAAAGGCAAGCACTCCTTCACTTCAAACAAGGTGTTGTGGATGATTTTGGAATGCTTTCTTCTTGGGGGAATGGGGAAGACAAAAGAGATTGTTGCAAATGGAGAGGAGTCGAGTGTGACAACCAGACGGGTCATGTGATCGTGCTTGATCCTCATGCTCCGTTTGATGGATATTTGGGAGGTAAGATTGGTCCTTCATTGGCAGAGTTGCAGCACTTGAAGCATTTGAACCTCAGCTGGAATGATTTTGAAGGAATTCTTCCCACTCAACTCGGAAATCTTTCCAACTTGCAATCCCTTGATCTCGGCCATAGTTTTGGGTTTATGACCTGTGGAAACCTTGAGTGGCTTTCTCACCTTCCTTTGTTAACACACCTTGACTTGAGTGGGGTTCATCTTAGTAAAGCAATCCATTGGCCACAAGCAATTAATAAAATGCCTTCCCTAACTGAGTTGTACTTGAGTTATACTCAGCTTCCTCCGATTATTCCAACAATATCCATTTCCCATATTAATTCCTCCACTTCTCTTGCTGTGCTTGATCTCTCCGTGAATGGTCTCACTTCTTCAATATACCCATGGTTGTTCAACTTCAGTAGCAGCCTTGTTCATCTTGACCTCTCTATGAATGATCTAAATGGTTCAATTCCGGATGCTTTTGGAAACATGACTACTCTGGCATATCTTGGTCTCTATGGGAACGAGCTACGTGGTTCAATTCCGGATGCTTTTGGAAACATGACTAGTCTGGCATATCTTTATCTCTCTTCAAATCAGCTTGAAGAACTTCAATTGGGTTGCATCTCAAGGATTAACAAGGTCTTAGTTCTTCCAATTGTTCTCAGCATGACTGTCCTTGTAGGACGACTCTGCTTCTTGTTATACCACAGTGTGTACAGGAGGAGGGCCTTGAAGAGAGCCCTGGAAAGCCCCTTGATTGTGTCCGGCGCTCCAATAAATTTCAGTTACTGTGATTTGCAGTGCAGAACCGGCAATTTGCACAGAGTTTGGGAGTGTATACAAGATGGGACATTGGTTGCAGTGAAGAAGCTTGACAAGCCTCTTGGGAAGAAGGAATTCATAACTGAAGTGAAAACTATTGGCTCTATGCATCACATGAACCTGGTTCAACTCTGCGGCTACTGCTCAGAAGGCTCTCACCAGCTTCTGGTTTATGAGTTCATGAAAAACGGTTTCTTGGACAAGTGGATATTTCCCTCAAAGCATTGTCGGGACAGACTGCTAGATTGGGGAACTCGCTTCCATATAGCCATTGCTACTGCACAAGGTATTGCTTATTTTCATGAGCAGTGCAGGAACCGGATCATCCACTGTGATATCAAGCCCGAAAACATACTTCTAGATGAGAATTTCTATCCAAAAGTTTCAGACTTTGGACTAGCAAAGCTGATGGGCAGAGAGCATTGA 1533 0.4364 MGTSPFRYFISFFLLMLCFEACLRVGDAKVGCRERERQALLHFKQGVVDDFGMLSSWGNGEDKRDCCKWRGVECDNQTGHVIVLDPHAPFDGYLGGKIGPSLAELQHLKHLNLSWNDFEGILPTQLGNLSNLQSLDLGHSFGFMTCGNLEWLSHLPLLTHLDLSGVHLSKAIHWPQAINKMPSLTELYLSYTQLPPIIPTISISHINSSTSLAVLDLSVNGLTSSIYPWLFNFSSSLVHLDLSMNDLNGSIPDAFGNMTTLAYLGLYGNELRGSIPDAFGNMTSLAYLYLSSNQLEELQLGCISRINKVLVLPIVLSMTVLVGRLCFLLYHSVYRRRALKRALESPLIVSGAPINFSYCDLQCRTGNLHRVWECIQDGTLVAVKKLDKPLGKKEFITEVKTIGSMHHMNLVQLCGYCSEGSHQLLVYEFMKNGFLDKWIFPSKHCRDRLLDWGTRFHIAIATAQGIAYFHEQCRNRIIHCDIKPENILLDENFYPKVSDFGLAKLMGREH* 511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g1052 510 SUPERFAMILY L domain-like 32 312 - -
Vvi16g1052 510 Gene3D Phosphorylase Kinase; domain 1 364 430 - -
Vvi16g1052 510 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 307 507 - -
Vvi16g1052 510 FunFam Protein kinase superfamily protein 430 505 - -
Vvi16g1052 510 FunFam Uncharacterized protein 364 430 - -
Vvi16g1052 510 Gene3D Ribonuclease Inhibitor 32 203 IPR032675 -
Vvi16g1052 510 SMART serkin_6 358 509 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi16g1052 510 Pfam Protein kinase domain 366 508 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi16g1052 510 Gene3D Ribonuclease Inhibitor 204 308 IPR032675 -
Vvi16g1052 510 Gene3D Transferase(Phosphotransferase) domain 1 431 510 - -
Vvi16g1052 510 Pfam Leucine Rich Repeat 107 129 IPR001611 GO:0005515
Vvi16g1052 510 Pfam Leucine rich repeat 237 295 IPR001611 GO:0005515
Vvi16g1052 510 ProSitePatterns Serine/Threonine protein kinases active-site signature. 477 489 IPR008271 GO:0004672|GO:0006468
Vvi16g1052 510 Pfam Leucine rich repeat N-terminal domain 35 75 IPR013210 -
Vvi16g1052 510 FunFam Uncharacterized protein 32 203 - -
Vvi16g1052 510 SUPERFAMILY Protein kinase-like (PK-like) 364 508 IPR011009 -
Vvi16g1052 510 SMART LRR_typ_2 181 205 IPR003591 -
Vvi16g1052 510 SMART LRR_typ_2 282 305 IPR003591 -
Vvi16g1052 510 SMART LRR_typ_2 105 128 IPR003591 -
Vvi16g1052 510 SMART LRR_typ_2 258 281 IPR003591 -
Vvi16g1052 510 ProSiteProfiles Protein kinase domain profile. 357 510 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi16g1052 510 FunFam Putative leucine-rich repeat receptor-like protein kinase family protein 204 307 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g1052 Vvi-Chr16 18879627 18886900 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g1052 77 506 Receptor kinase-like Gene Family AT5G07280 31.020 7.45e-43 161
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Vvi16g1052 Pkinase 6.8e-26 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g1052 - - vvi:100262816 585.104