Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g1051 ATGGGTTCCAACAAGAACCATCAATGGGCTGCCCAATCAATAACAAAAGGCCCTCGATGGTGGCCGGAAAAGCGAGCTCGACACGGAGAAACAATTGCCCATGCAGTTTGGGAGATCACAGAGCGAACTGTTGGAGTCTGGGCTTTTGTTTCTTCGTGTCGATCTCGCTTCCCTTTATGGCAGAGCTTTTCTCACCCTTCAGACACTCTCCTCCCAAACCAACCTCTCACAGCTTCAATGCAGCTCACATCCTCCTCACCGGCGCATGGTGGTTACTACACTATCCAGATGCTGCAGCAGCCCACTTCCCTCAGCCTTGGACTCATCTACAACTTGCCCGACTCTTACATCACCTCGTTGCAGTCTTACACCAACTACTCCTACTGGTCTGGACCCGATATATCAAACGTAACAGGCGATGTAGTCGCGGTTTTAGACAGGGCGGGGAGCTTTGGGATCATGCCATTAGTTCTTCGAAGACTGATACTCGAGATGAATGGGAATTTGAGGCTGTATCGTTGGGACGATGATGTGAACTGCACTCGCCAATGGGTGCCTGAATGGGCTGCAGTTTCTAACCCATGTGATATTGCTGGGGTTTGCGGAAATGGGGTGTGTAGCTTGGACAGAAGCAAGACTAATGCCTCCTGTACATGCCTGCCGGGGGCTTCTAAGGTGGGAGACAGCGGCCAGTGCTCAGAGAATTCGTCGGTGTCAGCTGGGAAATGTGATAATAATCATCGGAATTCAACTGCTTCCAAGCTGAAGATGTCTATAGTACAGCAAACTAACTACTATTACCCTGAATCTTCGATTATAGCAAATTATAGTAACATGTCCCAATTGTCAAAGTGTGGGGATGCTTGTTTATCAGACTGTGATTGTGTTGCTTCCGTGTATGGGCCGAGTGAGGAAAAGCCTTACTGTTGGCTGCTGAACAGCTTGGAGTTCGGTGGATTCGAGGACACGAGTTCGACGTTGTTTGTGAAGGTTGGGCCTAATGGGTCACCTGAAGACAAAGCAACAGGATCTGGGGATTCATCTGATGGCCTCCGGGACAAGGTCTTGGTTCTTCCAATTGTTCTCAGCATGACTGTCCTTGTAGCACTCCTCTGCCTGTTGTTATATCACACTCTGTACAGAAGGAGGGCCTTGAAGAGATCCCTGGAAAGCTCCTTGAGTGTGTCCGGTGCGCCAATGAATTTCAGTTACCGCAATTTGCAGTCCAGAACCGGCAATTTTTCGCAGTTGCTCGGCACAGGAGGGTTTGGGAGTGTATACAAGGGAAGCCTTTCAGATGAGGCATTGGTTGCAGTGAAGAAGCTTGACAAGGTTTTGTCTCATGGGGAGAAGGAATTCATAACTGAAGTGAACACCATTGGCTCTATGCATCACATGAACCTGGTTCGCCTATGTGGCTACTGCTCGGAAGGCTCTCACCGGCTTCTGGTTTATGAGTTCATGAAAAATGGTTCCTTGGACAAGTGGATATTCCCCTCAAAGCATTGCCGGGACAGACTGCTAGATTGGGGAACTCGTTTCCATATAGCCATTGCTACTGCACAAGGGATTGCTTATTTTCATGAGCAGTGCAGGAATCGGATAATCCACTGCGATATCAAGCCTGAAAACATACTTCTAGATGAGAATTTCTGTCCAAAAGTTTCAGACTTTGGACTAGCAAAGCTGATGGGCAGAGAGCATTCACATGTTGTCACTATGGTGAGAGGAACTAGGGGCTATCTGGCTCCAGAATGGGTTAGCAACCGGCCTATTACTGTAAAAGCCGATGTCTACAGTTACGGAATGCTTCTCCTGGAGATTGTTGGTGGCCGGAGAAACCTTGACATGACCTTTGATGCAGAAGACTTCTTCTATCCTGGGTGGGCTTTTAAGGAAATGAGTAATGGGACGACAAGAAAAGTTGCAGACAGGCGACTGGAAGGGGCAGTGGAGGAAGAGGAGCTAGAAAGAGCATTGAAAACTGGCTTTTGGTGCATTCAAGATGAGGTTTTCATGAGGCCTTCAATGGGGGAAGTGGTGAAGATGTTGGAAGGATCACTTGAAATCAACACACCGCCAATGCCACAGACAGTTCTGGAGCTCATGGAGGAGGGCTTAGACAATGTATACAGAGCCATGAAGAGAGAGTTCAACCAGTCCAGCTTCTTCACCATCAATAATAGTACCCATCCTTCATCAAGGGCTACATGTAGTTATTCCACAATGTCACCTAGATAG 2241 0.481 MGSNKNHQWAAQSITKGPRWWPEKRARHGETIAHAVWEITERTVGVWAFVSSCRSRFPLWQSFSHPSDTLLPNQPLTASMQLTSSSPAHGGYYTIQMLQQPTSLSLGLIYNLPDSYITSLQSYTNYSYWSGPDISNVTGDVVAVLDRAGSFGIMPLVLRRLILEMNGNLRLYRWDDDVNCTRQWVPEWAAVSNPCDIAGVCGNGVCSLDRSKTNASCTCLPGASKVGDSGQCSENSSVSAGKCDNNHRNSTASKLKMSIVQQTNYYYPESSIIANYSNMSQLSKCGDACLSDCDCVASVYGPSEEKPYCWLLNSLEFGGFEDTSSTLFVKVGPNGSPEDKATGSGDSSDGLRDKVLVLPIVLSMTVLVALLCLLLYHTLYRRRALKRSLESSLSVSGAPMNFSYRNLQSRTGNFSQLLGTGGFGSVYKGSLSDEALVAVKKLDKVLSHGEKEFITEVNTIGSMHHMNLVRLCGYCSEGSHRLLVYEFMKNGSLDKWIFPSKHCRDRLLDWGTRFHIAIATAQGIAYFHEQCRNRIIHCDIKPENILLDENFCPKVSDFGLAKLMGREHSHVVTMVRGTRGYLAPEWVSNRPITVKADVYSYGMLLLEIVGGRRNLDMTFDAEDFFYPGWAFKEMSNGTTRKVADRRLEGAVEEEELERALKTGFWCIQDEVFMRPSMGEVVKMLEGSLEINTPPMPQTVLELMEEGLDNVYRAMKREFNQSSFFTINNSTHPSSRATCSYSTMSPR* 747
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g1051 746 SUPERFAMILY Protein kinase-like (PK-like) 391 685 IPR011009 -
Vvi16g1051 746 ProSitePatterns Serine/Threonine protein kinases active-site signature. 535 547 IPR008271 GO:0004672|GO:0006468
Vvi16g1051 746 ProSitePatterns Protein kinases ATP-binding region signature. 418 441 IPR017441 GO:0005524
Vvi16g1051 746 Pfam Protein kinase domain 415 616 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi16g1051 746 PANTHER OS07G0415500 PROTEIN 49 696 - -
Vvi16g1051 746 Pfam S-locus glycoprotein domain 157 222 IPR000858 GO:0048544
Vvi16g1051 746 SMART serkin_6 412 724 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi16g1051 746 PIRSF SRK 48 737 IPR024171 GO:0004674
Vvi16g1051 746 Gene3D Phosphorylase Kinase; domain 1 377 487 - -
Vvi16g1051 746 Gene3D Transferase(Phosphotransferase) domain 1 488 701 - -
Vvi16g1051 746 FunFam S-receptor-like serine/threonine-protein kinase 382 487 - -
Vvi16g1051 746 ProSiteProfiles Protein kinase domain profile. 412 688 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi16g1051 746 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 488 694 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g1051 Vvi-Chr16 18856483 18860368 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g1051 362 694 Receptor kinase-like Gene Family AT5G20050 40.833 5.64e-80 261
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Vvi16g1051 Pkinase 9.9e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g1051 - - vvi:100243904 1326.23