Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g1047 ATGGCCTCTTCTTCTTCTCCTACCAGGGTTTTGTTCTTCTTGGCTTTGGCCGGGCTCGTCGGTGTTGCGACTGGTAGCGTTGGGTTGGGCGCGAGGTTGGTGGCTAAGGAGAATCGTGCTTGGGTTTCGGAGAATGGGACGTTTGCTTTCGGGTTTTCTCCGGTGGAGTCTGACGACCGGTATCAGTTGGGGATTTGGTTTGGGCAGCTTCCGGGAGATAGAACCATGGTTTGGTCTGCTAGCAGAAACTCCCCCGTCGGAAAAGATGCAGTACTGGAGCTCGACAGCACAGGAAACCTTCTCCTGCTCGACGGAGATGCAACAGTTTGGTCGTCAAATACCTCCGGCGAAGGTGTTGAGACGGCATACATGTCTGAATCCGGCAACTTCATCTTGTACAATGGCACCAACTTCCCTTTATGGCAGAGCTTTTCTCACCCTTCAGATACTCTCCTCCCAAACCAACCTCTCACAGCTTCAATGGAGCTCACATCCTCCTCACCTGCGCATGGTGGTTACTACACTCTCCAGATGCTGCAGCAGCCTACTTCCCTCAGCCTTGGACTCATCTACAACTTGCCCGACTCTTACATCACCTCGTTGCAGTCTTATGCCAACTACTCCTACTGGTCTGGACCCGATATATCAAACGTAACAGGAGATGTAGTCGCGGTTTTGGACGAGGCGGGGAGCTTTGGGATCATGTATGGGTCGTCATCTGATGGGGCGGTTTATGTTTACAAAAGTGATACTGATGAGAAAGGGCTGTCTTCGTCTGTGAATCAGACAGTTAGGCCATTAGTTCTTCGAAGACTGATACTCGAGATGAATGGGAATTTGAGGCTGTATCGTTGGGACGATGATGTGAACGGCACTCGCCAATGGGTGCCTGAATGGGCTGCAGTTTCTAACCCATGTGATATTGCTGGGGTTTGCGGAAATGGGGTGTGTAGCTTGGACAGAAGCAAGACTAATGCCTCGTGTACATGCCTGCCGGGGTCTTCTAAGGTGGGAGACAGCGGCCAGTGCTCAGAGAATTCGTCGGTGTCAACTGGGAAATGTGATAATAATCATCGGAATTCAACTGCTTCCAAGCTGAAGATGTCGATAGTACAGCAAACTAACTACTATTACCCTGAATCTTCGATTATAGCAAATTATAGTAACATGTCCCCATTATCAAAGTGTGGGGATGCTTGTTTATCAGACTGTGATTGTGTTGCTTCTGTGTATGGGCTGAGTGAGGAAAAGCCTTACTGTTGGCTGCTGAACAGCTTGGAGTTCGGTGGATTCGAGGACACGAGTTCGACCTTGTTTGTGAAGGTTGGGCCTAATGGGTCACCTGAAGGCAACGCAACAGGATCTGGGGATTCATCTGATGGCCTCCGGGACAAGGTCTTGGTTCTTCCAATTGTTCTCAGCATGATTGTCCTTGTAGCACTCCTCTGCTTCTTGTTATATCACACTGTGTACAGAAGGAGGGCCTTGAAGAGATCCCTGGAAAGCTCCTTGATTGTGTCCGGTGCTCCAATGAATTTCAGTTACCGCGATTTACAGTCCAGAACCGGCAATTTTTCGCAGTTGCTCGGCACAGGAGGGTTTGGGAGTGTATACAAGGGAAGCCTTTCAGATGGGACATTGGTTGCAGTGAAGAAGCTTGACAAGGTTTTGCCTCATGGGGAGAAGGAATTCATAACTGAAGTGAACACCATTGGCTCTATGCATCACATGAACCTGGTTCGCCTATGTGGCTACTGCTCGGAAGGCTCTCACCGGCTTCTGGTTTATGAGTTCATGAAAAATGGTTCCTTGGACAAGTGGATATTCCCCTCAAAGCATTGCCGGGACAGACTGCTAGATTGGGGAACTCGTTTCCATATAGCCATTGCTACTGCACAAGGGATTGCTTATTTTCATGAGCAGTGCAGGAATCGGATAATCCACTGTGATATCAAGCCTGAAAACATACTTCTAGATGAGAATTTCTGTCCAAAAGTTTCAGACTTTGGACTAGCAAAGCTGATGGGCAGAGAGCATTCACATGTTGTCACTATGGTGAGAGGAACTAGGGGCTATCTGGCTCCAGAATGGGTTAGCAACCGGCCTATTACTGTAAAAGCCGATGTCTACAGTTACGGAATGCTTCTCCTGGAGATCGTTGGTGGCCGGAGAAACCTTGACATGACCTTTGATGCAGAAGACTTCTTCTATCCTGGGTGGGCTTTTAAGGAAATGAGTAATGGGACGACAAGAAAAGTTGCAGACAGGCGACTGGAAGGGGCAGTGGAGGAAGAGGAGCTAGAAAGAGCATTGAAAACTGGCTTTTGGTGCATTCAAGATGAGGTTTTCATGAGGCCTTCAATGGGGGAAGTGGTGAAGATGTTGGAAGGATCACTTGAAATCAACACACCGCCAATGCCACAGACAGTTCTGGAGCTCATGGAGGAGGGCTTGGACAATGTATACAGAGCCATGAAGAGAGAGTTCAACCAGTCCAGCTTCTTCACCATCAATAATAGTACCCATCCTTCATCAAGGGCTACATGTAGTTATTCCACAATGTCACCTAGATAG 2574 0.4852 MASSSSPTRVLFFLALAGLVGVATGSVGLGARLVAKENRAWVSENGTFAFGFSPVESDDRYQLGIWFGQLPGDRTMVWSASRNSPVGKDAVLELDSTGNLLLLDGDATVWSSNTSGEGVETAYMSESGNFILYNGTNFPLWQSFSHPSDTLLPNQPLTASMELTSSSPAHGGYYTLQMLQQPTSLSLGLIYNLPDSYITSLQSYANYSYWSGPDISNVTGDVVAVLDEAGSFGIMYGSSSDGAVYVYKSDTDEKGLSSSVNQTVRPLVLRRLILEMNGNLRLYRWDDDVNGTRQWVPEWAAVSNPCDIAGVCGNGVCSLDRSKTNASCTCLPGSSKVGDSGQCSENSSVSTGKCDNNHRNSTASKLKMSIVQQTNYYYPESSIIANYSNMSPLSKCGDACLSDCDCVASVYGLSEEKPYCWLLNSLEFGGFEDTSSTLFVKVGPNGSPEGNATGSGDSSDGLRDKVLVLPIVLSMIVLVALLCFLLYHTVYRRRALKRSLESSLIVSGAPMNFSYRDLQSRTGNFSQLLGTGGFGSVYKGSLSDGTLVAVKKLDKVLPHGEKEFITEVNTIGSMHHMNLVRLCGYCSEGSHRLLVYEFMKNGSLDKWIFPSKHCRDRLLDWGTRFHIAIATAQGIAYFHEQCRNRIIHCDIKPENILLDENFCPKVSDFGLAKLMGREHSHVVTMVRGTRGYLAPEWVSNRPITVKADVYSYGMLLLEIVGGRRNLDMTFDAEDFFYPGWAFKEMSNGTTRKVADRRLEGAVEEEELERALKTGFWCIQDEVFMRPSMGEVVKMLEGSLEINTPPMPQTVLELMEEGLDNVYRAMKREFNQSSFFTINNSTHPSSRATCSYSTMSPR* 858
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g1047 857 FunFam S-receptor-like serine/threonine-protein kinase 493 598 - -
Vvi16g1047 857 PIRSF SRK 2 848 IPR024171 GO:0004674
Vvi16g1047 857 ProSitePatterns Protein kinases ATP-binding region signature. 529 552 IPR017441 GO:0005524
Vvi16g1047 857 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 599 805 - -
Vvi16g1047 857 CDD B_lectin 38 147 IPR001480 -
Vvi16g1047 857 SMART blect_4 32 147 IPR001480 -
Vvi16g1047 857 Pfam Protein kinase domain 526 727 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi16g1047 857 Gene3D Phosphorylase Kinase; domain 1 487 598 - -
Vvi16g1047 857 FunFam Serine/threonine-protein kinase 28 145 - -
Vvi16g1047 857 ProSitePatterns Serine/Threonine protein kinases active-site signature. 646 658 IPR008271 GO:0004672|GO:0006468
Vvi16g1047 857 SUPERFAMILY Protein kinase-like (PK-like) 502 796 IPR011009 -
Vvi16g1047 857 Pfam D-mannose binding lectin 75 160 IPR001480 -
Vvi16g1047 857 SMART serkin_6 523 835 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi16g1047 857 ProSiteProfiles Protein kinase domain profile. 523 799 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi16g1047 857 ProSiteProfiles Bulb-type lectin domain profile. 26 145 IPR001480 -
Vvi16g1047 857 Gene3D Transferase(Phosphotransferase) domain 1 599 812 - -
Vvi16g1047 857 Pfam S-locus glycoprotein domain 252 333 IPR000858 GO:0048544
Vvi16g1047 857 Gene3D - 28 146 IPR036426 -
Vvi16g1047 857 PANTHER OS07G0415500 PROTEIN 3 807 - -
Vvi16g1047 857 SUPERFAMILY alpha-D-mannose-specific plant lectins 76 163 IPR036426 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g1047 Vvi-Chr16 18826205 18829719 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g1047 477 805 Receptor kinase-like Gene Family AT5G20050 42.697 1.81e-81 268
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Vvi16g1047 Pkinase 1.3e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g1047 - - vvi:100243904 1728.76