Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g1044 ATGGAACAGAAGCACATTTTCTTGTCTGCGCTGAGCGTTGGGGTGGGTGTCTCGGTTGGGCTTGGTTTGGCTTCTGGACAGACAGTGAGTCGATGGACAGGGCTGAATTGCTCGCCGGACGCCATTACAGAAGAGCAGATTGAGCATGAGCTTCTGCGGCAGGTTGTGGATGGAAGGGAAAGCAAGATCACCTTTGATGAATTTCCTTATTTCCTCAGTGAGCAGACACGAGTATTACTTACAAGTGCTGCATATGTTCATCTAAAACACTCTGACTTTTCTAAGCACACTCGAAACCTTGCACCTGCAAGCAGGGCTATTTTGCTCTCAGGACCTGCTGAACTTTACCAGCAAACACTTGCCAAAGCTTTAGCACATTTCTTTGAAGCAAAGTTGCTGCTATTGGATGTTAATGACTTTTCTCTAAAGCTGCAAGGCAAATATGGTTGTCCCAAAAAAGAATCTTCTTCCAAGAAGTCCATCTCAGAAACAACATTGGGGCGAATGTCTAGTTTTCTTGGCTCTTTCTCAATCCTTCCCCAAAGAGAAGAAACCAAAGGCACATTATCTAGGCAAAGCAGTGGTGCCGATATTAAATCAAGATGTATGGAAGGTGCTAATAATCCTCCAAAGCATCGCAGGAATGCTTCTACTTCATCTGATATGAACACTGTTGCTTCCCAATCTACCACTCAAAGTTCAGCTCATGTCAAGCGCACAAGCAACTGGGCTTTTGATGAGAAACGTCTTTTGCAGTCACTTTGCAAGGTCTTGGTTTCAGTATCGGAAGCACGTTCCATTATTTTATACATCAGGGATGTTGAGAAGTTTCTTCTCCAATCAGATAGATTTTACAAATTGTTCCAGAAAATGTTGGACAAACTTTCAGGGTCAGTTCTGATACTTGGTTCCCGCATGTTGGACAATGATGATGAGGGCAGAGAAGTGGATGAGAGAGTGGGCCTTCTATTCCCTTACAATATTGAAATCAGGGCACCGGAGGATGAGACACGTCTTGATAGCTGGAAATCTCAACTGGAAGAGGAGTTAAAGATGCTCCAGTTTCAGGAAAACAAAAACCATATTGCTGAGGTGCTTGCAGCAAATGATCTCGACTGTGATGATTTGGGTTCAATCTGCCATGCAGACTCTATGATTCTAAGTAACTACATAGAAGAGATTGTAATATCTGCAATATCTTATCATTTGATGAATAACAAAGATCCAGAATACCGAAATGGAAAGCTTGTCATATCTTCCAAGAGTTTGTCCCATGGCTTGAATATATTCCAGCAAGGTAAAAGTGGTGGAAAAGATACACTAAAACTGGAAACAAATGCTGAATCTTCTAAGGATACCGAAGGGGAAGAGAGTACTGGTGGAAAGCCTGAAGGAAAGGCTGAGACTTCAGCACCTGGAAGCAAGAGTGAGACTGAGAAATCTGCACTAGCAAAGAAGGATGGTGAGAATCAACCTGCAACAAAAGCTGCAGAAGTTCCACCTGACAATGAATTTGAGAAGCGTATAAGGCCAGAGGTTATCCCAGCGAATGAGATAGGAGTGACATTTGATGATATCGGTGCTTTGAGTGACATTAAAGAATCACTTCAGGAGCTGGTCATGCTCCCTCTTCGAAGGCCAGACCTCTTCAAGGGTGGGCTTCTTAAGCCTTGTAGGGGAATATTGCTCTTTGGGCCTCCTGGTACTGGAAAAACCATGCTGGCAAAGGCCATTGCCAATGAAGCTGGAGCAAGCTTCATCAATGTCTCAATGTCCACCATCACTTCAAAATGGTTTGGTGAAGATGAGAAGAATGTTCGAGCTCTGTTCACACTCGCAGCAAAGGTCTCCCCAACTATTATTTTTGTGGATGAGGTCGATAGCATGCTCGGGCAGCGGACTAGAGTTGGAGAGCATGAAGCAATGCGTAAGATTAAGAATGAGTTCATGACACATTGGGATGGGCTACTGACAAAAGCTGGTGAACGAATCCTTGTTCTTGCTGCAACCAACAGGCCATTTGACCTTGACGAGGCAATTATCAGGCGGTTTGAGCGCAGAATTATGGTTGGTCTACCATCTGTGGAGAGCAGGGAGATGATCTTGAAGACTCTCCTGGCAAAAGAAAAAGCAGAGGATCTTGACTTTAAGGAGCTTGCAACCATGACAGAAGGATATACTGGAAGTGATCTTAAGAACTTGTGCGTGACGGCAGCTTATCGACCTGTTAGGGAGCTACTACAACAAGAGAGAATGATGAAGGATAAGGAAAAGAAGCAGAAAGCTGATGAAGGGCAAAGCTCAGAGGATGCTTCGGATGCCAAAGAAGAAGCTAAAGAGGAGAAAGAAATTGTTCTGAGACCCTTAAACATGGAAGACATGAGGCAGGCAAAGAATCAGGTTGCTTCTAGTTTTGCTTCTGAGGGAGCAGTAATGAATGAGCTGAAGCAGTGGAATGAGTTGTATGGAGAAGGCGGTTCAAGGAAGAAGAAACAACTGACCTACTTCCTATAG 2514 0.4403 MEQKHIFLSALSVGVGVSVGLGLASGQTVSRWTGLNCSPDAITEEQIEHELLRQVVDGRESKITFDEFPYFLSEQTRVLLTSAAYVHLKHSDFSKHTRNLAPASRAILLSGPAELYQQTLAKALAHFFEAKLLLLDVNDFSLKLQGKYGCPKKESSSKKSISETTLGRMSSFLGSFSILPQREETKGTLSRQSSGADIKSRCMEGANNPPKHRRNASTSSDMNTVASQSTTQSSAHVKRTSNWAFDEKRLLQSLCKVLVSVSEARSIILYIRDVEKFLLQSDRFYKLFQKMLDKLSGSVLILGSRMLDNDDEGREVDERVGLLFPYNIEIRAPEDETRLDSWKSQLEEELKMLQFQENKNHIAEVLAANDLDCDDLGSICHADSMILSNYIEEIVISAISYHLMNNKDPEYRNGKLVISSKSLSHGLNIFQQGKSGGKDTLKLETNAESSKDTEGEESTGGKPEGKAETSAPGSKSETEKSALAKKDGENQPATKAAEVPPDNEFEKRIRPEVIPANEIGVTFDDIGALSDIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANEAGASFINVSMSTITSKWFGEDEKNVRALFTLAAKVSPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMTHWDGLLTKAGERILVLAATNRPFDLDEAIIRRFERRIMVGLPSVESREMILKTLLAKEKAEDLDFKELATMTEGYTGSDLKNLCVTAAYRPVRELLQQERMMKDKEKKQKADEGQSSEDASDAKEEAKEEKEIVLRPLNMEDMRQAKNQVASSFASEGAVMNELKQWNELYGEGGSRKKKQLTYFL* 838
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g1044 837 MobiDBLite consensus disorder prediction 211 238 - -
Vvi16g1044 837 Pfam ATPase family associated with various cellular activities (AAA) 561 691 IPR003959 GO:0005524|GO:0016887
Vvi16g1044 837 Coils Coil 339 359 - -
Vvi16g1044 837 FunFam p-loop nucleoside triphosphate hydrolase superfamily protein 520 695 - -
Vvi16g1044 837 MobiDBLite consensus disorder prediction 753 785 - -
Vvi16g1044 837 MobiDBLite consensus disorder prediction 446 463 - -
Vvi16g1044 837 Pfam AAA+ lid domain 713 757 IPR041569 -
Vvi16g1044 837 MobiDBLite consensus disorder prediction 183 238 - -
Vvi16g1044 837 Gene3D - 520 779 IPR027417 -
Vvi16g1044 837 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 46 836 - -
Vvi16g1044 837 MobiDBLite consensus disorder prediction 446 509 - -
Vvi16g1044 837 MobiDBLite consensus disorder prediction 183 197 - -
Vvi16g1044 837 ProSitePatterns AAA-protein family signature. 664 683 IPR003960 GO:0005524|GO:0016887
Vvi16g1044 837 SMART AAA_5 557 694 IPR003593 GO:0016887
Vvi16g1044 837 Gene3D - 693 776 - -
Vvi16g1044 837 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 521 749 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g1044 Vvi-Chr16 18768815 18776853 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g1044 521 752 Calmodulin-binding Proteins AT3G56690 39.831 6.01e-44 170
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g1044 - - vvi:100257581 1578.15