Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g1042 ATGGAACAGAAGCACATATTGTTGTCTGCCTTGATCGTTGGGGTGGGCGTCTCGGTTGGCCTTGGTTTGGCTTCTGGACAGACAGTGTGTCGATGGACGGGGCTGAAACTCTGGCCGGACGCAATTACAGAAGAGCAGATTGAGCATGAGCTACGGCGACAGGTCATGGATGGAAGGGAAAGCAAGATCACCTTCGACAAGTTTCCTTATTTCCTCAGTAAGCAGACAAGAGTGTTACTGACAAGTGCTGCACATTTCCATCTAAGGCAGTCTGACTTTTCTAAGCACACCCGAAACCTTACGCCTGCAAGCAGAGCTATTTTGCTCTCAGGACCTGCTGAACTGTACCAGCAAACACTCGCCAAAGCTCTAGCTCATTTCTTCCAAGCAAAGTTGCTGCTGTTGGACCTTAATGACTTTTCTCTGAAGATGCAGAGCAAATATGGAAGCCCCAAAAGAGAATCTTCTTCCAAGAAGTCCATCTCAGAGGTGACACTGGGGCCGATGTCTGGTTTTCTTGGCTCTTTCTCAATCCTTCTCCAGAGTGAAGAAGAAGAAACCAAAGGCACATTGTCTAGGCAAAGCAGTGGTGCCCATATTAAATCAAGATGTATGAATCCTCCAAAGCATGGTAGCAATGCTTCTACTCCATCTAATACAAAGAACACTGTTGCTTCTCAACGTGTTACTACAAGTTCAGCTCATTTCAAGCGCACAAGCAACTGGGCTTTTGATGAGAAGCAACTTTTGCAGTCACTTTACAAGGTCTTGGATTCAGTATCAGAAACATGTCCCATTATTTTATACCTCAGGGATGTCGAGAAGCTTCTTCTCCAATCAGAAAGATTATACAAATTGTTCCAGAAAATGTTGGGTAGATTATCAGGATCAGTTCTGATACTTGGTTCCCGCATGCTAGACCCTGATGACGAGGACGAAGAAATGGATGAAAGGGTGAGTCTCTTATTCCCTTACAATATTGAAATCAAGGAGCCCGAGGATGAGACTTGTCTTGATATCTGGGAAGCCCAACTGGAAAAGGAGAGAGAGATGATCCAGTTTCAGGAAAACAAAAATCATATTGCTGAGGTGCTTGCAGCAAATGATATTGGCTGTGATAATTTGGGTTCAATCTGCCATGCAGACTCCATGATTCTAAGTGACCACATAGAAGAGATTGTAATATCTGCACTATCTTATCATTTGATGCATAACAAAAATCCAGAATACCGAAATGGAAAGCTTGTCATATCTTCCAAGAGTTTGTCCCATGGATTGAGTATATTCAAGGAAGACACACGAAAGACAAATGCTGAATCTTCTAAGTTGGTTCCACCTTACAATGAATTTGAGAGGCGTATAAGGCCAGAGGTTATCCCAGCAAATCAGATAGGAGTGGCATTTGAGGACATTGGTGCCTTGGATGACATTAAAGAATCTCTTCAGGAGCTGGTTATGCTCCCTCTTCAGAGGCCAGACCTCTTCAAGGGTGGGCTTCTGAAGCCTTGCAGGGGGATATTACTCTTCGGACCTCCTGGTAATGGAAAAACTATGCTGGCAAAGGCCATTGCCAATGAAGCTGGAGCACGCTTCATCAATGTCTCAATGTCCACCGTCACTTCAAAATGGTTTGGTGAAGTTGAGAAGAATGTTCGAGCTCTGTTCACACTCGCAGCAAAGATCTCCCCAACTATTATTTTTGTGGATGAGGCTGACAGTTTGCTTGGGCAGCGGACCGAAGTTGGAGAGCATTATGCTATGCGACAGATTAAGAATGAGTTCATGACACATTGGGATGGACTACTGACAAAAGCTGGTGAACGAGTCCTCGTTCTTGCTGCAACCAACAGGCCATTTGACCTTGATGAGGCGATTATCAGGCGGTTTGAGCACAGAATTATGGTTGGTCTACCATCTGTGGAGAGCAGGGAGATGATATTGAAGACTCTCTTGGCAAAAGAAAAAGCAGAGGATCTTGACTTTAAGGAGCTTGCAACCATGACAGAAGGTTATACTGGAAGTGATCTTAAGAATTTGTGCATGACAGCAGCTTATCGTCCTGTAAAGGAGCTACTACAACAAGAGAGATTGAAGGAGGATAAAAAAAAGAAGCAGAAAGCTGATGAAGGGAAAAGCTCAGAGGATGCTTCGGATACCAAAGAAGAAGCCAAAGGGGAAAAGGTAATTGTTCTGAGACCCTTAAACATGGAAGACATGAGGCAGGCAAAGAATCAGGTTGCTGCTAGTTTTGCTTCTGATGAAGCAGTAATGAACAAGCTGAAGCAGTGGAATGAATTGTATGGAGATGGCGGTTCAAGGAGGAAGAAACAACTGACCTACTTCCTATAG 2349 0.4419 MEQKHILLSALIVGVGVSVGLGLASGQTVCRWTGLKLWPDAITEEQIEHELRRQVMDGRESKITFDKFPYFLSKQTRVLLTSAAHFHLRQSDFSKHTRNLTPASRAILLSGPAELYQQTLAKALAHFFQAKLLLLDLNDFSLKMQSKYGSPKRESSSKKSISEVTLGPMSGFLGSFSILLQSEEEETKGTLSRQSSGAHIKSRCMNPPKHGSNASTPSNTKNTVASQRVTTSSAHFKRTSNWAFDEKQLLQSLYKVLDSVSETCPIILYLRDVEKLLLQSERLYKLFQKMLGRLSGSVLILGSRMLDPDDEDEEMDERVSLLFPYNIEIKEPEDETCLDIWEAQLEKEREMIQFQENKNHIAEVLAANDIGCDNLGSICHADSMILSDHIEEIVISALSYHLMHNKNPEYRNGKLVISSKSLSHGLSIFKEDTRKTNAESSKLVPPYNEFERRIRPEVIPANQIGVAFEDIGALDDIKESLQELVMLPLQRPDLFKGGLLKPCRGILLFGPPGNGKTMLAKAIANEAGARFINVSMSTVTSKWFGEVEKNVRALFTLAAKISPTIIFVDEADSLLGQRTEVGEHYAMRQIKNEFMTHWDGLLTKAGERVLVLAATNRPFDLDEAIIRRFEHRIMVGLPSVESREMILKTLLAKEKAEDLDFKELATMTEGYTGSDLKNLCMTAAYRPVKELLQQERLKEDKKKKQKADEGKSSEDASDTKEEAKGEKVIVLRPLNMEDMRQAKNQVAASFASDEAVMNKLKQWNELYGDGGSRRKKQLTYFL* 783
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g1042 782 Pfam AAA+ lid domain 658 694 IPR041569 -
Vvi16g1042 782 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 467 697 IPR027417 -
Vvi16g1042 782 ProSitePatterns AAA-protein family signature. 609 628 IPR003960 GO:0005524|GO:0016887
Vvi16g1042 782 Gene3D - 638 711 - -
Vvi16g1042 782 Coils Coil 338 358 - -
Vvi16g1042 782 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 46 781 - -
Vvi16g1042 782 Pfam ATPase family associated with various cellular activities (AAA) 506 636 IPR003959 GO:0005524|GO:0016887
Vvi16g1042 782 MobiDBLite consensus disorder prediction 695 724 - -
Vvi16g1042 782 FunFam p-loop nucleoside triphosphate hydrolase superfamily protein 465 640 - -
Vvi16g1042 782 MobiDBLite consensus disorder prediction 187 232 - -
Vvi16g1042 782 Gene3D - 465 637 IPR027417 -
Vvi16g1042 782 MobiDBLite consensus disorder prediction 187 201 - -
Vvi16g1042 782 SMART AAA_5 502 639 IPR003593 GO:0016887
Vvi16g1042 782 MobiDBLite consensus disorder prediction 208 232 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g1042 Vvi-Chr16 18748878 18753944 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g1042 466 697 Calmodulin-binding Proteins AT3G56690 40.678 3.84e-43 167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g1042 - - vvi:100252698 1454.5