Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g1032 ATGCAAATTCTACATTTTGATATCAAGCCTCACAATATTCTTTTGGATGAAGACTTTACTCCAAAAGTTTCAGATTTTGGCCTTGCTAAATTGTATTCAACATATGAAAGTATTGTGTCTCTCACTGTAGCTCGAGGAACCTTAGGATATATTGCTCCAGAGTTGTTTTATAAAAATATTGGAGGTGTGTCGCATAAAGCTGATGTTTATAGTTTTGGAATGTTATTGATGGAAATAGTGGGAAAACGGAGACATGTGAGTGTACATGAAGAGAATCTAAATGAAATTTACTTCCCATCATGGATTTATGACAAAATCAAGCAGGGAAAAGCCATTGAAATTGGAGATGCCAAAGAAGAGGATATGAAATATATATTGAAGATGGTCATAGTTGCATTGTGGTGTGTGCAGATGAAGCCCATGGACCGTCCTTCCATGAGCAAAGCACTAGAGATGCTAGAAGGTGATGTTGAGCTCTTGCAAATGCCTCCTAAGCCTACTCTTTATTCTCATGAAATGTCAGCTGAGGATCGGGAGAACAATCCAGTTGATGTATCAATTTCCTCATGTAATGCTAATATTACAATTAGCCTAGATGGAAGGTAA 606 0.3713 MQILHFDIKPHNILLDEDFTPKVSDFGLAKLYSTYESIVSLTVARGTLGYIAPELFYKNIGGVSHKADVYSFGMLLMEIVGKRRHVSVHEENLNEIYFPSWIYDKIKQGKAIEIGDAKEEDMKYILKMVIVALWCVQMKPMDRPSMSKALEMLEGDVELLQMPPKPTLYSHEMSAEDRENNPVDVSISSCNANITISLDGR* 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g1032 201 PANTHER RUST RESISTANCE KINASE LR10-RELATED 1 174 IPR045874 GO:0004672
Vvi16g1032 201 ProSiteProfiles Protein kinase domain profile. 1 160 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi16g1032 201 SUPERFAMILY Protein kinase-like (PK-like) 2 154 IPR011009 -
Vvi16g1032 201 Pfam Protein kinase domain 1 151 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi16g1032 201 ProSitePatterns Serine/Threonine protein kinases active-site signature. 3 15 IPR008271 GO:0004672|GO:0006468
Vvi16g1032 201 Gene3D Transferase(Phosphotransferase) domain 1 1 172 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g1032 Vvi-Chr16 18658927 18659532 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g1032 2 186 Receptor kinase-like Gene Family AT5G38280 50.794 8.22e-61 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Vvi16g1032 Pkinase 2.5e-22 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g1032 - - vvi:109121550 406.371