Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g1031 ATGGTCTACTTTTGGATCGAGACAATTTTTCATACTTCCTTTACAATCCAAGGACTTAAAAAATATATTGATGTCACTTCTGCTTACTATGTGATTGTCTGGGTTCTTCAAAAGGCTGTCATAATATTCATTGGAGGGCGCACTGTGCTTGGGATATCTTGCCTGTTTGGCTGTTTATTCTACATGTTTCGACAGAGGCACTTGTCAGTAGACAATAATATTGAAGAATTTCTACAAAATCAGAGAAATTTCCAACCTATCAAGTACTCGTATTCACAATTAAAGAATATGACCAATAATTTCAAGAATAAATTAGGCCAAGGAGGTTTTGGTTCTGTATATAAAGGAAAGCTTCAAAGTGGTCGTGCTATAGCAGTAAAAGTGTTAATCATGTCAAAATCTAATGGACAAGATTTCATTAGTGAAGTCGCTACAATTGGAAGAATTCACCATGTTAACGTGGTAAGACTTGTTGGGTTTTGCGTAGAAGGATCAAAATGGGCCCTTATATATGACTTTATGCCAAATGGGTCTCTTGATAAGTTCATCTTCATTGAAAGAGAAAAGGGAATTCATTTGAGTTAG 585 0.3538 MVYFWIETIFHTSFTIQGLKKYIDVTSAYYVIVWVLQKAVIIFIGGRTVLGISCLFGCLFYMFRQRHLSVDNNIEEFLQNQRNFQPIKYSYSQLKNMTNNFKNKLGQGGFGSVYKGKLQSGRAIAVKVLIMSKSNGQDFISEVATIGRIHHVNVVRLVGFCVEGSKWALIYDFMPNGSLDKFIFIEREKGIHLS* 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g1031 194 Gene3D Phosphorylase Kinase; domain 1 63 173 - -
Vvi16g1031 194 FunFam serine/threonine-protein kinase PBS1-like 68 173 - -
Vvi16g1031 194 Pfam Protein tyrosine and serine/threonine kinase 101 184 IPR001245 GO:0004672|GO:0006468
Vvi16g1031 194 ProSitePatterns Protein kinases ATP-binding region signature. 105 127 IPR017441 GO:0005524
Vvi16g1031 194 SUPERFAMILY Protein kinase-like (PK-like) 84 185 IPR011009 -
Vvi16g1031 194 ProSiteProfiles Protein kinase domain profile. 99 194 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi16g1031 194 PANTHER RUST RESISTANCE KINASE LR10-RELATED 71 185 IPR045874 GO:0004672
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g1031 Vvi-Chr16 18657394 18658860 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g1031 80 183 Receptor kinase-like Gene Family AT5G38280 55.963 1.69e-36 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Vvi16g1031 PK_Tyr_Ser-Thr 7e-17 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g1031 - - vvi:100242322 395.201