Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g1030 ATGATGGAGAAAGAATCAAAGGTTGTGGGAGTAGGCCTCATAATACTCCTCCATGTCTGGTTCCTTTCAATTTGTGTTGCTACTGAAACCAAGGCCTGCAGGTCTTCTTGCGGGGATATCCAAATCAGCGATCCTTTTCGATTAGAAGGTGATTCAACTGGCTGCGGTGATCCCGAGTATGAATTGGCTTGTAAAAACAACCGTTTAATATTAGATGGGAAATACAATGTCAAGGAGATCAACTACAATAACTACACCATTAGAGTAGTAGTTCCTGGGATAGAGAAGGGAAACTGTTTCTCTACTCCTCTCTATTCCTTGGCACCATATAATTATAGATTTCGATCTGGTGTTGGACACAATACCATAGTTTTGATGAACTGCACCAGGCAAATCAGTGATCAAAACTACATTCCTATTACTCCTTGCAATACAAGTACCAACGGTTCTTCCCCTTCTTCACCATCATACGCTTATGCTCTAGTTGGAAACTCCAAGCAGGTGGGAGATCTTCCCTACTCGTGCACCTTTGGCACTACTGTTATTACTGGTAAATTGCAGGCAGTTTCAGAGCCCCCCATTAGATCAATGTCAGATGTGCAACAAAGCCTTCTTATGGGGGTTGAGCTTTCGTTTTTGAGATTCCGCTGCAGCGAATGCGCGAAAGGCCTACTCTGCTATGCAAATATTAGTAACAACACTATACAATGCTTCACATGGCATACCAGAAAATATTGGCTTAAGTTTTTGAAAGACGACGTACTGGTTCCAGTGGTCTCCTTCTTCACCCGTGCATTTTTTCGAAGCCCCTTTACGATCCAAGGTCTTAAAAATTATCTTGACCAAAATCTTGGTTCATATGACTCCAGGACTGTTGTAATTGGAGCCTGGTTTCTTCAAAAGACTGTCATAATAATCATTGGAGGGCGCACTATGATTGGGATATCTTGCCTGCTTGGTTATTTGATCTACAAGTTTCGAAGAAGACACTTATCTGCAGATGATAATATTGAAGAATTTCTGCGAACTCATCAAAATCTCCAGCCCATCAGGTACTCATATTCACATTTAAAGAAGATGACCAACAATTTTAAGAACAAGTTAGGCCAAGGAGGTTTTGCCTCCGTATACAAAGGAAAACTTCGAAGTGGTCATATTGTAGCAGTAAAAATGTTAACTATGTCAAAAGCTAAGGAACAAGATTTCATCAATGAAGTTGCTACAATCGGAATGATTCACCATGTTAATGTGGTACGACTTGTTGGATTTTGTGTAGAAAGATCAAAATGGGCTCTTATATATGATTTCATGCCAAACGGGTCTCTTGATAAATTCATCTTTTTTGATGGAGAAAAGAGTGCTCCTTTGAGTTGGGATAGATTATATAAGATTGCACTTGGAGTAGGACGTGGAATTGAATATTTACATCAAGGGTGTGACATGCAAATTCTACATTTTGACATCAAGCCCCACAATATTCTTTTGGATGAAAACTTTACTCCAAAAGTTTCAGATTTTGGACTTGCTAAATTATATTCAACAGATGAAAGTGTTGTATCCCTCACTGCAGCCCGAGGAACATTAGGATATATTGCTCCGGAGTTGTTTTATAAAAACATTGGAGGAGTATCATATAAAGCTGATGTTTATAGTTTTGGAATGTTATTGATGGAAATAGTAGGAAAGCGGAGGCACGTGAGTGTTCATGAGGAGAATCTCAGTGAAATATTCTTCCCATCATGGATTCATGACAAAATCAAACAGGGAGAAGATATTGAAATTGGTGATGCCAAAGAAGATGATATGAAATATATGAAAAAGATGGTCATCGTTGCATTATGGTGTGTGCAAATGAAGCCCACAGACCGGCCTTCCATGAGCAAAGCACTGGAGATGCTGGAAGGTGAGGTTGAACTCTTGCAAATGCCTCCTAAGCCTACTCTTTATTCTCATGAAATGTCAGCTGAAGACCGGGAGAACAGTCCAATTGGTGTACCATTTTCCTCATGCAATGCTAATATTACAATTAGCCTAGATGGAAGGTAA 2046 0.3969 MMEKESKVVGVGLIILLHVWFLSICVATETKACRSSCGDIQISDPFRLEGDSTGCGDPEYELACKNNRLILDGKYNVKEINYNNYTIRVVVPGIEKGNCFSTPLYSLAPYNYRFRSGVGHNTIVLMNCTRQISDQNYIPITPCNTSTNGSSPSSPSYAYALVGNSKQVGDLPYSCTFGTTVITGKLQAVSEPPIRSMSDVQQSLLMGVELSFLRFRCSECAKGLLCYANISNNTIQCFTWHTRKYWLKFLKDDVLVPVVSFFTRAFFRSPFTIQGLKNYLDQNLGSYDSRTVVIGAWFLQKTVIIIIGGRTMIGISCLLGYLIYKFRRRHLSADDNIEEFLRTHQNLQPIRYSYSHLKKMTNNFKNKLGQGGFASVYKGKLRSGHIVAVKMLTMSKAKEQDFINEVATIGMIHHVNVVRLVGFCVERSKWALIYDFMPNGSLDKFIFFDGEKSAPLSWDRLYKIALGVGRGIEYLHQGCDMQILHFDIKPHNILLDENFTPKVSDFGLAKLYSTDESVVSLTAARGTLGYIAPELFYKNIGGVSYKADVYSFGMLLMEIVGKRRHVSVHEENLSEIFFPSWIHDKIKQGEDIEIGDAKEDDMKYMKKMVIVALWCVQMKPTDRPSMSKALEMLEGEVELLQMPPKPTLYSHEMSAEDRENSPIGVPFSSCNANITISLDGR* 682
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g1030 681 Gene3D Transferase(Phosphotransferase) domain 1 437 642 - -
Vvi16g1030 681 FunFam PR5-like receptor kinase 437 645 - -
Vvi16g1030 681 PANTHER RUST RESISTANCE KINASE LR10-RELATED 334 653 IPR045874 GO:0004672
Vvi16g1030 681 Pfam Wall-associated receptor kinase galacturonan-binding 33 90 IPR025287 GO:0030247
Vvi16g1030 681 CDD STKc_IRAK 368 635 - -
Vvi16g1030 681 Gene3D Phosphorylase Kinase; domain 1 327 436 - -
Vvi16g1030 681 Pfam Protein kinase domain 365 631 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi16g1030 681 FunFam serine/threonine-protein kinase PBS1-like 331 436 - -
Vvi16g1030 681 SMART serkin_6 362 633 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi16g1030 681 SUPERFAMILY Protein kinase-like (PK-like) 339 634 IPR011009 -
Vvi16g1030 681 ProSitePatterns Serine/Threonine protein kinases active-site signature. 483 495 IPR008271 GO:0004672|GO:0006468
Vvi16g1030 681 ProSitePatterns Protein kinases ATP-binding region signature. 368 390 IPR017441 GO:0005524
Vvi16g1030 681 ProSiteProfiles Protein kinase domain profile. 362 640 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g1030 Vvi-Chr16 18632633 18635667 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g1030 345 657 Receptor kinase-like Gene Family AT5G38280 51.553 2.36e-110 346
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Vvi16g1030 Pkinase 7e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g1030 - - vvi:100252566 1364.36