Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g1029 ATGATCATAAACAGTTGCTTGAAAATGGTCCTTCCTTTATTTTTCTTATTCCTGAGATTATCTGCAGAGATTGGAGCTAACCAAGATGAGTGCAAGGTACCAAGTTGCAGTCCCCACGGTCCAGCCATTAAGTTCCCGTTCCGGCGAAAAGATCAGCCATACCACTGTGGATATCTCGGGTTTGAGATATCTTGCACAGAAAAGAAGCAGACCATACTGGAGCTGCCATATTCAGTTAAGCTCTCAGTGGATAAAATAAATTACAAATCTCGGGAGATTGTCGTCCATGACCCGGATTTTTGCCTTCAAAGACAGCTTCAAAACCTTACTTTATCTGCCTCTCCCTTCCAGTTCAAAGTTGACTCTTCCAACTTCGAAAGCTGGACAGACGACTACACTTTCTTCAGTTGTTCCTCAGATACAAGAGAGTATGAATTTCCATTTACGTTAATCCCTTGCAGATCTAGATTTCTCCACGAAAACCCAGTTTATGCTGTTCGTTCATTCATGCAACTCGATTGGTTGGATCTATCCTCTTGCCACAAGCTTTACAACCTTTCACTCCCTGATGGTATAGTTGATGGGAAAAAATTTTCTTTAACTTGGTCTGAATCGATATGCGGAAATTGTGAAAAAGCGGGTCAGAAATGCAGACTAAAGAGCAATAGCAAGGGACCTGAAACTGAATGCATTCCTAAACAAGTAAAAGGTGTAATCCTTGGTTTCTTTGTTCTCGTGTTTGTAATCATCATACTTCATCGCGTGTATAGATCAAATGAATCTAAAAGAGAAAATATTGTGAGAATCGAAAAGTTTTTGGAAGATTACAAAGCTCTCAAACCTTCAAGATACTCATACAATGATATTAAGAAGCTTACAAATCACTTCAAGGATAAATTGGGTCAAGGAGGTTATGGAACCGTGTACAAAGGAAAGCTTTCTAATGAAGTTCTTGTCGCAATAAAGATCCTTAATGATTCCAAAGGAAATGGAGAAGAGTTCATTAATGAAGTGGGAACGATAGGTAGAATTCATCATGTCAATGTAGTTCGTTTGGTTGGATTTTGTGCTGATGGAGTTAAGCGAGCTTTAATTTATGAGTTCTTACCAAATGAGTCTTTGGAGAAGTTCATCTTTTCAACATCTGTTGAGACCTATTCACTTGGTTGGGAGAAACTTCAAGACATTGCTATAGGCATAGCCAAAGGAATTGAGTATCTTCATCAAGGTTGTGATCAAAGGATTCTCCATTTTGATATCAAACCTCATAATATTTTGCTTGACGAAAACTTTAATCCTAAGATATCCGACTTTGGTTTGGCGAAATTGTGTTCCAAGGATCAAAGTGCAGTTTCAATGACTGTAGCAAGAGGGACCATGGGGTACATTGCACCAGAAGTATTATCTAGAAACTTTGGGAATGCGTCTTATAAGTCAGATGTTTATAGTTTTGGAATGTTATTACTTGAAATGGTAGGAGGAAGGAAGAATATTGATGTTACGATGGAGACTAACCAAGTATACTTTCCTGAATGGGTTTATAATCAGTTAGATCAAGGGGAAGATGTGCATATTCGAATTGAGGAAGAAGGAGACATTAAAATAGCAAAGAAACTAACAATTGTGGGACTTTGGTGCATACAATGGTATCCAATTGATCGTCCTTCCATGAAAGTTGTGGTTCAAATGTTGGAAAGAGAAGGAGACAATTTAACAATACCTCCCAATCCTTTTGCCTCTATAGGTTCAACAGGAGGAAACATCAGAAGGCGCAAAAAATCTCTTCAACAAGAGTTGACAATTATCTCAGAATAG 1815 0.3829 MIINSCLKMVLPLFFLFLRLSAEIGANQDECKVPSCSPHGPAIKFPFRRKDQPYHCGYLGFEISCTEKKQTILELPYSVKLSVDKINYKSREIVVHDPDFCLQRQLQNLTLSASPFQFKVDSSNFESWTDDYTFFSCSSDTREYEFPFTLIPCRSRFLHENPVYAVRSFMQLDWLDLSSCHKLYNLSLPDGIVDGKKFSLTWSESICGNCEKAGQKCRLKSNSKGPETECIPKQVKGVILGFFVLVFVIIILHRVYRSNESKRENIVRIEKFLEDYKALKPSRYSYNDIKKLTNHFKDKLGQGGYGTVYKGKLSNEVLVAIKILNDSKGNGEEFINEVGTIGRIHHVNVVRLVGFCADGVKRALIYEFLPNESLEKFIFSTSVETYSLGWEKLQDIAIGIAKGIEYLHQGCDQRILHFDIKPHNILLDENFNPKISDFGLAKLCSKDQSAVSMTVARGTMGYIAPEVLSRNFGNASYKSDVYSFGMLLLEMVGGRKNIDVTMETNQVYFPEWVYNQLDQGEDVHIRIEEEGDIKIAKKLTIVGLWCIQWYPIDRPSMKVVVQMLEREGDNLTIPPNPFASIGSTGGNIRRRKKSLQQELTIISE* 605
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g1029 604 Pfam Wall-associated receptor kinase galacturonan-binding 31 97 IPR025287 GO:0030247
Vvi16g1029 604 ProSitePatterns Protein kinases ATP-binding region signature. 300 322 IPR017441 GO:0005524
Vvi16g1029 604 PANTHER RUST RESISTANCE KINASE LR10-RELATED 265 584 IPR045874 GO:0004672
Vvi16g1029 604 SMART serkin_6 294 564 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi16g1029 604 ProSitePatterns Serine/Threonine protein kinases active-site signature. 415 427 IPR008271 GO:0004672|GO:0006468
Vvi16g1029 604 ProSiteProfiles Protein kinase domain profile. 294 579 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi16g1029 604 Gene3D Phosphorylase Kinase; domain 1 268 368 - -
Vvi16g1029 604 Pfam Protein kinase domain 296 562 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi16g1029 604 FunFam serine/threonine-protein kinase PBS1-like 262 368 - -
Vvi16g1029 604 FunFam PR5-like receptor kinase 369 575 - -
Vvi16g1029 604 SUPERFAMILY Protein kinase-like (PK-like) 278 565 IPR011009 -
Vvi16g1029 604 Gene3D Transferase(Phosphotransferase) domain 1 369 572 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g1029 Vvi-Chr16 18629753 18632196 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g1029 198 577 Receptor kinase-like Gene Family AT1G66910 44.703 7.93e-108 337
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Vvi16g1029 Pkinase 7.5e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g1029 - - vvi:100257702 1214.52