Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g1024 ATGGAAGACCACTCTTCATTACCACCCCCACCACACAAAACTTATAGAATAACAGCCTCTTCAATCTCTTACACCAAACCAACCACCAATAACTACACCATTGTCCCCACCTTCCTCTTCCAACCCTGCACTACAACTCCACCAACCTACATTCTCCGGGACATCTGCCTGACTGCTTATCCATCTCAAGTTCTCGCTATTGTTGGCCCAAGTGGAGCAGGGAAGTCCACCCTTCTCGACATTTTAGCTGCTCGAACCTCGCCTACAAGTGGCTCTCTCCTTCTCAATTCTTCCCCTCTCAACCGTTCTTCATTCAGGAAGCTCTCAGCTTATGTACCTCAACATGATGCATGCTTACCCCAGCTTACTGTTTCTGAAACTTTTGCCTTCGCAGCCAGCCTCCTTGTTCCCAAATCTTCCAAAATTGCCATCATAGTAGCCTCTCTTCTCAGTGAGCTCAGGCTAACTCACCTAGCACATACCAGGCTCGCCCATGGGCTATCTGGCGGTGAGCGTCGACGAGTCTCTATAGGCCTCAGCCTTCTCCATGACCCTGCCGTGTTGCTTCTTGATGAGCCAACATCTGGGCTTGACAGCAATTCGGCTTTCAATGTGATGCAGACCCTGCAGTCGATTGCGCAATCACGCCACCGCACTGTGATCTTGTCCATTCATCAACCTAGTTTCAAGATCCTTTCCACCATTGATAAAGTCCTTTTGCTCTCAAAAGGAACTGTTATCCACCATGGAACTCTTTCTTCACTTGAAACGTTCTTACTCTCCCATGGCTTCACTGTTCCTTCGCAGCTCAATTCCCTTGAATACGCTATGGAAATACTGAGCCAACTCCATGAGCATAAACCCCTTACACCACCATCACTTCCTCCATCACCAGAAATTCCTGAAATTTCTCCTTCTAATCATAGCGGATCAATGATCAGATATAGGAGCTCAAGACTCCATGAAGTACTCGCTTTGTACAACAGGTTTTGGAAGATCGTTTACAGAACCAGACAGCTTCTCCTCGTGAACGCATTGGAAGCTCTTGGTGTGGGCCTTGTTCTAGGAACCATTTACATCAACATTGGATTCGACAAGCAAGGAATGGAGAAGCGATTAGGCCTCTTTGCCTTCACTCTCACCTTCCTCCTCTCTTCAACAACCGAAACTCTCCCAATTTTCATCAATGAAAGGCCAATTCTACTCAGGGAAACTTCAAGTGGGGTGTACAGGCTCTCGTCATATCTCATCGCAAACACATTGGTTTTCTTGCCATACTTGCTGGCCATCGCCATCATTTACTCAGTCTCCGTATACTTCTTAGTGGGTCTCTGTGCTACATGGCAAGCTTTTGCCTACTTTGTTTTGGTGATATGGGTAATAGTCCTCATGGCAAATTCATTTGTTCTCTTCCTGAGTTCGGTAGCTCCAAACTACATCGCCGGAACATCACTAGTCACAATATTTCTGGGCGCTTTCTTTCTCTTCTCCGGCTACTTCATCTCAAAAGACAGCATGCCCAAGTACTGGCTGTTCATGCACTTCTTCTCCATGTACAAATATGCCTTGGATGCCTTCCTCATCAATGAGTACTCATGCCTTGTTTCAAGGTGTTTGTTATGGTACGAAGAGAACAAGACATGTATGGCGACTGGGCGTGATGTGCTGCAGAAGAAAGGGCTCCATGAGAGGCAGAGATGGACCAACATCTACATGTTGATTGGATTCTTTTTCTTCTATCGTGTGCTTTGCTTTCTGGTTTTGATCAGGAGGGTTCGAAGATCAAAGAATTGA 1794 0.4638 MEDHSSLPPPPHKTYRITASSISYTKPTTNNYTIVPTFLFQPCTTTPPTYILRDICLTAYPSQVLAIVGPSGAGKSTLLDILAARTSPTSGSLLLNSSPLNRSSFRKLSAYVPQHDACLPQLTVSETFAFAASLLVPKSSKIAIIVASLLSELRLTHLAHTRLAHGLSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSNSAFNVMQTLQSIAQSRHRTVILSIHQPSFKILSTIDKVLLLSKGTVIHHGTLSSLETFLLSHGFTVPSQLNSLEYAMEILSQLHEHKPLTPPSLPPSPEIPEISPSNHSGSMIRYRSSRLHEVLALYNRFWKIVYRTRQLLLVNALEALGVGLVLGTIYINIGFDKQGMEKRLGLFAFTLTFLLSSTTETLPIFINERPILLRETSSGVYRLSSYLIANTLVFLPYLLAIAIIYSVSVYFLVGLCATWQAFAYFVLVIWVIVLMANSFVLFLSSVAPNYIAGTSLVTIFLGAFFLFSGYFISKDSMPKYWLFMHFFSMYKYALDAFLINEYSCLVSRCLLWYEENKTCMATGRDVLQKKGLHERQRWTNIYMLIGFFFFYRVLCFLVLIRRVRRSKN* 598
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g1024 597 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 29 268 IPR003439 GO:0005524
Vvi16g1024 597 SMART AAA_5 61 253 IPR003593 GO:0016887
Vvi16g1024 597 FunFam ABC transporter G family member 8 34 261 - -
Vvi16g1024 597 Pfam ABC-2 type transporter 225 284 IPR043926 GO:0140359
Vvi16g1024 597 Pfam ABC-2 type transporter 323 531 IPR013525 GO:0016020|GO:0140359
Vvi16g1024 597 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 47 256 IPR027417 -
Vvi16g1024 597 ProSitePatterns ABC transporters family signature. 167 181 IPR017871 GO:0005524|GO:0016887
Vvi16g1024 597 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 15 582 - -
Vvi16g1024 597 Gene3D - 41 282 IPR027417 -
Vvi16g1024 597 Pfam ABC transporter 52 195 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g1024 Vvi-Chr16 18530377 18532170 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g1024 45 255 Calmodulin-binding Proteins AT2G36910 30.493 8.04e-19 89.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g1024 K05681 - vvi:100245835 1099.35