Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g1015 ATGGCGTCCGATCTGGAGATCAGAGCCGGCAAGGCCTTCATCGACGACCACTTTGAACTCGCCGTTGACCTGTACACTCAGGCCATCGAAATAAACCCTAATCATGCCGAGCTCTATGTTGAACGATCTCAGGCCAACATCAAACTCAACAACTTCACTGAGGCTGTTGCTGATGCAAACAGAGCAATTGAGTTGGACCCATCAATGTCTAAAGCATTCTTGCGGAAAGGCACTGCATGTATGAAGCTTGAGGAATATCAAACTGCTAAGGCAGCCTTCGAAACAGGGGCTTCCTTGGCACCGGGAGATTCAAGATTCACTAATTTGATAAAAGAATGCGAAGAGTGCATTGCAGAGGAAACTGATGGCCTACCAAAGCAGTCAGTGGTACCAGCCCCTGAAGCTGTTGAATCTCCTGAAACTGTTGTAGCTGCAGAGGAAGTTCATCAGGTGCCAATGGTAACAGCAAGCAAACCAAAATACAGGCATGAATATTACCAGAAACCACAAGAAGTGGTTGTCACCATATTTGCAAAAGGCGTACCAGATGAAAATGTTGTTGTTGACTTTGGTGAACAAATACTGAGTGTCAGCATTGATGTTCCTGGTGATGTTGCATATCATTTTCAACCTCGCTTATTTGGAAAGATAATACCCGACAAGTGTAGATATGAAGTATTGTCAACCAAAATTGAAATCCGACTTGCAAAAGCTGAAGAAATTCATTGGACTTCTCTTGAATTCAGCAAGGAAAATACAGTTCCACAGAGGATAAATGTATCTACAAGTGTTGCATCTCAAAGGCCCACTTACCCGTCCTCTAAGACTAGAATGGTAGATTGGGATAAGCTGGAAGCACAAGTCAAGAAGGAGGAGAAAGAAGAAAAGCTGGATGGAGATGCAGCTCTGAACAAATTTTTCCGGGACATATATAAAGATGCAGACGAAGACACAAGAAGGGCCATGCAAAAATCTTTTGTGGAGTCAAATGGGACAGTGCTGTCGACAAACTGGAAGGAAGTTGGATCGAAGAAGGTTGAGGGAAGCCCTCCCGATGGCATGGAGATGAAGAAATGGGAGTACTGA 1086 0.442 MASDLEIRAGKAFIDDHFELAVDLYTQAIEINPNHAELYVERSQANIKLNNFTEAVADANRAIELDPSMSKAFLRKGTACMKLEEYQTAKAAFETGASLAPGDSRFTNLIKECEECIAEETDGLPKQSVVPAPEAVESPETVVAAEEVHQVPMVTASKPKYRHEYYQKPQEVVVTIFAKGVPDENVVVDFGEQILSVSIDVPGDVAYHFQPRLFGKIIPDKCRYEVLSTKIEIRLAKAEEIHWTSLEFSKENTVPQRINVSTSVASQRPTYPSSKTRMVDWDKLEAQVKKEEKEEKLDGDAALNKFFRDIYKDADEDTRRAMQKSFVESNGTVLSTNWKEVGSKKVEGSPPDGMEMKKWEY* 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g1015 361 SUPERFAMILY TPR-like 7 114 IPR011990 GO:0005515
Vvi16g1015 361 SMART tpr_5 2 35 IPR019734 GO:0005515
Vvi16g1015 361 SMART tpr_5 70 103 IPR019734 GO:0005515
Vvi16g1015 361 SMART tpr_5 36 69 IPR019734 GO:0005515
Vvi16g1015 361 ProSiteProfiles TPR repeat profile. 36 69 IPR019734 GO:0005515
Vvi16g1015 361 CDD p23_CS_SGT1_like 164 247 - -
Vvi16g1015 361 FunFam Protein SGT1 homolog A 159 250 - -
Vvi16g1015 361 Pfam SGS domain 280 359 IPR007699 -
Vvi16g1015 361 Gene3D Tetratricopeptide repeat domain 1 128 IPR011990 GO:0005515
Vvi16g1015 361 Gene3D - 154 265 IPR008978 -
Vvi16g1015 361 ProSiteProfiles CS domain profile. 158 247 IPR007052 -
Vvi16g1015 361 ProSiteProfiles SGS domain profile. 270 361 IPR007699 -
Vvi16g1015 361 Pfam Tetratricopeptide repeat 36 68 IPR019734 GO:0005515
Vvi16g1015 361 Pfam Tetratricopeptide repeat 71 102 IPR019734 GO:0005515
Vvi16g1015 361 PANTHER PROTEIN SGT1 HOMOLOG 1 359 IPR044563 GO:0051087
Vvi16g1015 361 Pfam CS domain 162 237 IPR007052 -
Vvi16g1015 361 FunFam Protein SGT1 homolog 1 132 - -
Vvi16g1015 361 SUPERFAMILY HSP20-like chaperones 157 254 IPR008978 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g1015 Vvi-Chr16 18399053 18408081 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g1015 1 86 U-box Gene Family AT3G07370 29.070 8.87e-06 45.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g1015 K12795 - vvi:100244083 716.072