Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g1012 ATGATGAGAATCAACGCCAAGACCCTTTCAAGGGACTCGTGGTCTTGGCGGAAGTATGGGCAGAAGCCAATCAAGGGATCCCCATATCCACGGAACTACTATCGCTGCAGCACCTTGAAGGCTTGCTCTGCTAGGAAACAAGTAGAGCTCAGTCAAGACAACCCCGAGGAGTACATCGTCAGCTACATAGGTGATCACATCCACGCCCGCCCCACCACCCGGAGATCCCTTGCCGGCACAGCCAGAAACCCTCCACCGGCCGCCCCCACCTCCGTCACAGATCTCTCACCAACCACACCATTGACTGCTCATTACAACAACAAAACCCAAAAGCCAGACACGGAGAATGAAAACGAAAACAGTGAGCCAATGTTTGAAGACGAAGAAGAAGAAGAAGAAGAAGCTGATATTCTCACAACAAACATGCAGATGTCAGAAGAAACATTCATGGCCATGCATGTACTAAACTCAAGAGATTCACAACCGACCATTGCCGAACCTCATTCTCCGGCCAAAAACTCCATTAACGCAGCCGGAAGCTCCGATTAG 549 0.5046 MMRINAKTLSRDSWSWRKYGQKPIKGSPYPRNYYRCSTLKACSARKQVELSQDNPEEYIVSYIGDHIHARPTTRRSLAGTARNPPPAAPTSVTDLSPTTPLTAHYNNKTQKPDTENENENSEPMFEDEEEEEEEADILTTNMQMSEETFMAMHVLNSRDSQPTIAEPHSPAKNSINAAGSSD* 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g1012 182 MobiDBLite consensus disorder prediction 119 136 - -
Vvi16g1012 182 MobiDBLite consensus disorder prediction 86 109 - -
Vvi16g1012 182 SMART WRKY_cls 10 70 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vvi16g1012 182 MobiDBLite consensus disorder prediction 75 136 - -
Vvi16g1012 182 Pfam WRKY DNA -binding domain 12 68 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vvi16g1012 182 Coils Coil 128 148 - -
Vvi16g1012 182 ProSiteProfiles WRKY domain profile. 5 71 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vvi16g1012 182 Gene3D WRKY domain 1 72 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vvi16g1012 182 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 8 152 IPR044810 GO:0003700
Vvi16g1012 182 MobiDBLite consensus disorder prediction 157 182 - -
Vvi16g1012 182 SUPERFAMILY WRKY DNA-binding domain 7 71 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g1012 Vvi-Chr16 18360079 18360711 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g1012 1 104 WRKY Transcription Factor Family AT5G52830 53.390 6.32e-35 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vvi16g1012 WRKY 3.5e-23 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g1012 K13425 - vvi:104882213 342.428