Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g0987 ATGGTCTCTGTCATTCCCAGCCCTTCCTCTGAAGCCTTCTACTTCGATCCCGCTTCAATGGCTCTGCCCGGACTCGGACCCTTCGCCACCACCGCCGCCGCTGCCGCTGCTGCAACCACCTCGTCTTTGGAGGATCCGGCTAAGAAGATCCGGAAGCCCTACACTATTACCAAGTGCAGAGAGAAGTGGACCGAGCCCGAGCACGACAAGTTCCTCGAAGCTCTTCAGCTTTTTGACCGTGATTGGAAAAAGATTGAGGCATTTGTTGGATCAAAGACAGTTATTCAGATACGTAGTCATGCACAGAAGTACTTTCTGAAGGTTCAGAAGAATGGAATAAATGAACATCTACCTCCCCCCCGGCCAAAAAGAAAAGCAGCACATCCATATCCTCACAAAGCCTCCAAAAATGCTCCAGTACTCTCACAAGGGACAGGGTCTTTCCATTCTTCAGCTGCTCTACGTGAAACCGGATATGTTCTTAGGCCTGATTCATCATCAATTCTTAGGAACCCAATCACTAGTGCTGCTGCATCTTCCTGGACTAACAGCAAACCTGCACAAACAGTTGGTTTGTCACATGTGGCAAAAGGTGATATGAGATCTGCAGGGCCAACAGTGCCTAATAATTGTTGCAGTAGCGCTGAGAGCACTCCAAGAGGAAGGACAACCGTTGAAGCATCTGAGCAAGGGAATCATGTCCATACATTGAGAGTTCTGCCTGACTTTGTTCAGGTATACAGATTCATTGGCAGTGTTTTTGACCCTAATTCTACTGGCCATTTACAGAAGCTAAAAAAGATGGATCCAATAGATGTTGAAACAGTGTTGCTGTTGATGAGAAACCTCTCCATCAATTTGACCAGCCCTGATTTTGAGGATCATAGAAAATTGCTTTCAACCTATGAGATCGACTCAGAGACAACTAGCCATGGTGTTGAGAGTAATAAAATCCCTCAGGATGACCAAACCAAGGACAGAGCTCAACTTGGGACCAAAGACAAAGATGAATGA 1014 0.4655 MVSVIPSPSSEAFYFDPASMALPGLGPFATTAAAAAAATTSSLEDPAKKIRKPYTITKCREKWTEPEHDKFLEALQLFDRDWKKIEAFVGSKTVIQIRSHAQKYFLKVQKNGINEHLPPPRPKRKAAHPYPHKASKNAPVLSQGTGSFHSSAALRETGYVLRPDSSSILRNPITSAAASSWTNSKPAQTVGLSHVAKGDMRSAGPTVPNNCCSSAESTPRGRTTVEASEQGNHVHTLRVLPDFVQVYRFIGSVFDPNSTGHLQKLKKMDPIDVETVLLLMRNLSINLTSPDFEDHRKLLSTYEIDSETTSHGVESNKIPQDDQTKDRAQLGTKDKDE* 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g0987 337 PANTHER SWI/SNF COMPLEX-RELATED 35 288 - -
Vvi16g0987 337 SMART sant 59 107 IPR001005 -
Vvi16g0987 337 MobiDBLite consensus disorder prediction 199 229 - -
Vvi16g0987 337 MobiDBLite consensus disorder prediction 113 144 - -
Vvi16g0987 337 ProSiteProfiles SANT domain profile. 61 111 IPR017884 -
Vvi16g0987 337 SUPERFAMILY Homeodomain-like 54 110 IPR009057 -
Vvi16g0987 337 NCBIfam myb-like DNA-binding domain, SHAQKYF class 58 107 IPR006447 GO:0003677
Vvi16g0987 337 Gene3D - 62 110 - -
Vvi16g0987 337 MobiDBLite consensus disorder prediction 206 229 - -
Vvi16g0987 337 MobiDBLite consensus disorder prediction 318 337 - -
Vvi16g0987 337 CDD SANT 62 105 IPR001005 -
Vvi16g0987 337 FunFam protein REVEILLE 6 isoform X1 62 110 - -
Vvi16g0987 337 MobiDBLite consensus disorder prediction 306 337 - -
Vvi16g0987 337 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 55 109 IPR017930 -
Vvi16g0987 337 Pfam Myb-like DNA-binding domain 60 105 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g0987 Vvi-Chr16 18074303 18081783 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vvi16g0987 Myb_DNA-binding 2.5e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g0987 - - vvi:100252586 659.448