Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g0985 ATGATTATCCCCGAGAAGAATCGGAGAGAGATCTCCAAGTACCTCTTCCAAGAGGGAGTTTGCTATGCAAAGAAGGACTACAATCTTGCAAAACACCCCGAAATTGATGTTCCAAATCTGCAGGTGATTAAGTTGATGCAGAGCTTTAAGTCAAAGGAATATGTACGGGAGACATTTGCTTGGATGCACTACTACTGGTACCTCACTAATGATGGGATTGAGTTTCTTAGGACTTACCTGAATCTCCCATCAGAGATTGTGCCTGCCACCTTGAAGAAGTCTGTGAAACCCCCTGGTCGGCCAATGGGTGGCCCACCTGGTGACCGTCCACGTGGCCCGCCTCGCTTTGATGGAGACCGTCCCAGGTTTGGTGATCGTGATGGGTATCGTGGAGGCCCTCGTGGCCCTCCAGGCGAGTTTGGTGGTGACAAGGGAGGAGCTCCTGCTGACTTCCAGCCTTCATTTAGGGGGTCGGGTGGAAGGCCTGGCTTTGGACGAGGAGGTGGAGGTTTTGGTGCTGCACCATCAAGCTCAAACTTTTGA 543 0.5157 MIIPEKNRREISKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFAWMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKSVKPPGRPMGGPPGDRPRGPPRFDGDRPRFGDRDGYRGGPRGPPGEFGGDKGGAPADFQPSFRGSGGRPGFGRGGGGFGAAPSSSNF* 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g0985 180 Pfam Plectin/S10 domain 3 94 IPR005326 -
Vvi16g0985 180 FunFam 40S ribosomal protein S10 1 104 - -
Vvi16g0985 180 PANTHER 40S RIBOSOMAL PROTEIN S10 1 176 IPR037447 -
Vvi16g0985 180 MobiDBLite consensus disorder prediction 112 129 - -
Vvi16g0985 180 MobiDBLite consensus disorder prediction 91 180 - -
Vvi16g0985 180 Gene3D - 1 104 IPR036388 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g0985 Vvi-Chr16 18059062 18061821 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g0985 1 156 Cytoplasmic Ribosomal Protein Gene Family AT5G52650 80.769 9.85e-78 228
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g0985 K02947 - vvi:100257720 216.468