Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g0982 ATGGATAGGAGGCTGTTGTCAGGGGTTGAGGTGAATGGTTCCGGCCAATGGTGCAGTCATGCTAGTGGGACGACTGATCTTGAGAGTTATGATTCCGATGTGGGATCCAGAGTGAGGAGTGTGGCGTTGGATCATGGGTGGGGGAAGTGGTATAGTCTCGAGGAAATTGAAGTGATCACCAATGGTTTTTCTGATGAGAATGTGATTGATAGCGGGTACTCCTGGGTGGTTTATAGCGGGATGTTGTTGGATAACAGGCGAGTCGCGGTGAAAGACTTGGTGATTGAGAGTGAAAATCATGAGGAGTTTATGGTGGAAATAGAGACAATTGGGCATGCTACTCACAAGAACCTGGTCAAGTTGATTGGATACTCCATTGAAGGAGATCACAGGATGCTTGTGTATGATTATACAGATAATGGGAATCTGCATCAATGGCTTCATGCTTATGCAGGGTCAGTTAGCCCACTAACATGGAGTATTAGGATGAAAATTATCATGGGAACGGCAAAAGGATTGGCATACCTGCATGAAGATATAGAACCAAATGCTATTCATAGAGACTTAAAGTCCAGCAACATTTTGCTTGATCAACAATGGAATCCCAAAATATTCGATTTCGGTTTCCTGAAGCTAATTGGTGATGAGGGGAGTCAGGCTACAACTCATGTTGCAGACACACCAGGTTATTTAGCACCAGAGTATGCTTCAACTGGAATTTTGACGGATAAGAGTGATGTCTATAGCTTTGGAGTTCTTATCATGGAGATAATCTCTGGTAGAACCCCTCTAGATTACGGGCAACCCCAATCAGAGGTATGTTTGGTTGACTGGGTGAAGTCCATGGTTTCAGACCGAAAACTTGACTTTGTGGTGGATCCTAAGTTGCCTGAAATGCCTGATTCAATCGAACTCAAACGGGTTCTTTTGATCGCTCTTTGTTGTGTTGATCCAGATGCCAAAAGCAGGCCTAAAATGGGAGATGTTATCCACATGCTCGAGCCGCGAGACCCGCTGTTCATAGCTCATTGCTGTAAGAACAGTTTGTTTTTCTAA 1056 0.4422 MDRRLLSGVEVNGSGQWCSHASGTTDLESYDSDVGSRVRSVALDHGWGKWYSLEEIEVITNGFSDENVIDSGYSWVVYSGMLLDNRRVAVKDLVIESENHEEFMVEIETIGHATHKNLVKLIGYSIEGDHRMLVYDYTDNGNLHQWLHAYAGSVSPLTWSIRMKIIMGTAKGLAYLHEDIEPNAIHRDLKSSNILLDQQWNPKIFDFGFLKLIGDEGSQATTHVADTPGYLAPEYASTGILTDKSDVYSFGVLIMEIISGRTPLDYGQPQSEVCLVDWVKSMVSDRKLDFVVDPKLPEMPDSIELKRVLLIALCCVDPDAKSRPKMGDVIHMLEPRDPLFIAHCCKNSLFF* 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g0982 351 Gene3D Phosphorylase Kinase; domain 1 33 137 - -
Vvi16g0982 351 Gene3D Transferase(Phosphotransferase) domain 1 138 338 - -
Vvi16g0982 351 Pfam Protein tyrosine and serine/threonine kinase 71 333 IPR001245 GO:0004672|GO:0006468
Vvi16g0982 351 FunFam serine/threonine-protein kinase PBS1-like 31 137 - -
Vvi16g0982 351 PANTHER OS01G0323000 PROTEIN 40 340 - -
Vvi16g0982 351 FunFam Putative receptor-like serine/threonine-protein kinase 138 346 - -
Vvi16g0982 351 ProSiteProfiles Protein kinase domain profile. 63 340 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi16g0982 351 SUPERFAMILY Protein kinase-like (PK-like) 45 334 IPR011009 -
Vvi16g0982 351 SMART serkin_6 63 340 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g0982 Vvi-Chr16 18042202 18043841 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g0982 29 329 Trihelix Transcription Factor Family AT1G68690 44.444 1.44e-76 246
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-V Vvi16g0982 PK_Tyr_Ser-Thr 3e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g0982 - - vvi:100267993 707.212