Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g0979 ATGTTGAATGGACTAGTATCAGGTGGGGAACTTCCTGAGAAGCTCCATCAAGTGGCCTCATCACACACCACTTGTTTTGAGAGGCCATTTACTTGTCCAGTAGGTGACTGCCATTCCAGCTATAGAAGAAAAGTTCACTTGACCCGCCTCCTTCTTAAGCACCAAGGGAAACTCTTCACATGCCCTGTTCAGAATTGCAACAGTAGATTTGCTTTTCAAAGCAGCATCAAAAGGCATGTTAAGGAATTTCATGATGAGTCTCCCCCTAACAATGTTGGTTCCAAACAACAAACAATACGTATGCTCAGAAATTGGGTGTGGAAAGTGCCTCAAGGCTCATCTCGAGTCCTGCCACCAACACATATTATCTGTGAGACATGTGGCACCAATCAGCTGAGGAAGAACATCAAGAGGCACCTCAAGACACATAAATCAGGATGTTCCTCAGAGAGAATCAGATGCCACTTCAAGGGTTTTCTCCACACATTTTCAACCAAATCAAATCCTTCATCAGCATGTGAAGGCTGTGCATCTTCAACTCAGACCATTTGTCTGTGGCATTCCGGGTTGTTGCATGAGATAGAGATAACCATGAGAAAACCAGATGCCATTAACACTGTAACTACAATGTTTCAGGGGGATTTTGAGGAGTTGGATGAACAATTCAGGCAGAGGCCAAGGGGTGGCCGGAAGAGGACGTCCCCACCTGTAGAAGCAGTGCTGCGGAAGAGGGTGACTCCACCAAGTCAGTCAGATTCCATCTCGAGTCAAGGATCCGAGTTCCTTTCTTGGCTGCTCTCAGCAGGTGCTGAGGATCAGCAGTGA 825 0.4655 MLNGLVSGGELPEKLHQVASSHTTCFERPFTCPVGDCHSSYRRKVHLTRLLLKHQGKLFTCPVQNCNSRFAFQSSIKRHVKEFHDESPPNNVGSKQQTIRMLRNWVWKVPQGSSRVLPPTHIICETCGTNQLRKNIKRHLKTHKSGCSSERIRCHFKGFLHTFSTKSNPSSACEGCASSTQTICLWHSGLLHEIEITMRKPDAINTVTTMFQGDFEELDEQFRQRPRGGRKRTSPPVEAVLRKRVTPPSQSDSISSQGSEFLSWLLSAGAEDQQ* 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g0979 274 ProSiteProfiles Zinc finger C2H2 type domain profile. 59 89 IPR013087 -
Vvi16g0979 274 Gene3D Classic Zinc Finger 26 96 - -
Vvi16g0979 274 MobiDBLite consensus disorder prediction 222 258 - -
Vvi16g0979 274 SUPERFAMILY beta-beta-alpha zinc fingers 57 85 IPR036236 -
Vvi16g0979 274 ProSitePatterns Zinc finger C2H2 type domain signature. 61 84 IPR013087 -
Vvi16g0979 274 PANTHER ZINC FINGER PROTEIN 12 88 - -
Vvi16g0979 274 SMART c2h2final6 59 84 IPR013087 -
Vvi16g0979 274 SMART c2h2final6 122 143 IPR013087 -
Vvi16g0979 274 SMART c2h2final6 30 54 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g0979 Vvi-Chr16 18020282 18021654 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g0979 26 93 C2H2 Transcription Factor Family AT1G72050 55.714 1.04e-19 85.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vvi16g0979 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g0979 K09191 - vvi:100260239 264.618