Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g0971 ATGAGAATTGAGAAATCCATTCAATCTCGCAAGTCCATTTCACTCACAGACTCGAACCCATCTCCAGGCTCGTCCAATCTGTACCACACTGCCAGAGTTTTCACGGGAGCTTCAAGGTATGAGTTCCGTATCCAGCAAGCAGGTACCCATTTCGTTCGTTTCCATTTTTGGCCATTCAATTCTCGAAACCATCGTTTGAAATCCGCAAAGTTTGGTGTTTCTCTTAATGGGTATCCGATTCTGAGGAATTTTACCACTAAAAATGCCGTGATAAAGGAGTATATCCTGAGGGTTGATGATAAAAAGCTGGAAGTTCTGTTTTCGCCTGAGGGAGGATCTAGGTTTGGTTTTGTTAATGCAATTGAGGTTTTTTCAGCTCCTGGGGATCTGATTCCTGATTATGGGCCTAGATTACTTAGTCCTAGTGGATCTGAAGAGTTCTATAATCTGTCATCGAAAATTTTGGAAACTGTTCATAGGATCAATGTCGGTGGTTCAATATTAACCCCTTTTAATGATACTTTATGGAGGACTTGGATCAATGATGAGGATTTCTTAGTTCTGAAATCTGCAGCAAAACCTGCACTCACCACACATACCCCTAATTACCAGGAAGGAGGCGCAACCCAGGAAATTGCACCTGATAATGTTTATATGACTGCACAACAGATGAATAGGGATAATGTGACATCGGATTCGAGATTCAATATAAGTTGGAAATTTGAAGTGGGTTCTCATAGTGCCAGGCACTTGGTTAGGTTGCATTTTTGTGATATTGTTAGTAAATCACTTAACTTGCTCTACTTCAATGTGTATATTAATGGGCTGCTTGCGGTCAGGGATCTTGATTTGTCTGTCCTTACATTCCATGAGCTTGCATCACCTTACTATATGGATTTTGTTGTGGATTCGGATAATTCAGGGGTTACGAGGATAAGTGTTGGTCCTTCTGACCTCAGCCCGGTCTCAGCAAGAAATGCAATTTTGAATGGGGTAGAAATCATGAAGTTGGTGAATTTTGTGGCTCAACAAAGCGAGGATAAGAAGAAAAATATCTGGGTTCTGGTGGGTTCAATTGTTGTGGGGTTTGTTGTTGTATGTTTGATAGTGCTTGCAGTTTTGGTTGCGTTGAAATGCAAGAAGAAGAAACCAAAACCAAGACCTGCTGAGAGTGTAGGTTGGACTCCTTTACGGGTAGCCAGTTCCTACAGCAGGATGTCTGAAGGGACGGCCAATCCATATCTAGGTCCAAATTTATACCTTGGCTTGAAGATCCCTTTTGCTGATATACAACTGGCTACAAACAATTTTGACAGGAGTTTGGTTATTGGTTCGGGTGGCTTCGGTATGGTTTATAAAGGGGTTCTTAGAGACAATACTAGGATTGCCGTGAAGCGAGGTGTGCCGGGGTCTAGGCAGGGCCTCCCTGAATTCCAGACTGAGATAACTGTTTTGTCCAAAATTCGCCATCGTCATCTTGTTTCACTTGTTGGGTATTGTGAAGAACAGTCAGAAATGATACTGGTTTATGAGTATATGGACAAAGGACCATTGAAGACTCATTTGTATGGTTCAGAATTGCCTCCTTTGACTTGGAAGCAGAGGCTCGATATATGCATAGGTGCAGCAAGAGGTCTTCACTATCTTCATACAGGTTCGGCACAGGGAATCATCCATCGTGACATTAAATCAACCAATATTTTGCTTGATGAGAATTATGTTGCTAAGGTGGCTGATTTTGGTCTTTCAAAATCTGGCCCTTGTCTCAATGAAACCCATGTAAGTACTGGTGTAAAGGGTAGTTTTGGCTATCTTGATCCTGAGTATTTTCGGAGGCAGCAGCTCACAGATAAATCAGATGTTTATTCATTTGGGGTTGTGCTTCTTGAAGTGCTTTGTGCTAGACCTGCCGTTGATCCGCTGCTTGCTAGGGAGCAGGTGAATTTAGCTGAATGGGCAATGCAATGGCAGCAGAAAGGCCTGCTTGCTAAAATCATTGATCCTCACCTTGTGGGCAAGATAAAACCAAGCTCTTTAAAAAAGTTTGGAGAAACAGCTGAAAAATGTTTAGCAGAATATGGTGTCGATAGGCCAACCATGGGTGATGTATTATGGAATTTGGAGTATGTACTTCAGCTTCAGGAAACTGGCACACGAAGAGAATCACATGAAGATAGTGATATTAATACATCAGAGCTTCCATCACACAGTGCAGTTCCCTTACCTCATTCTAGCAACATTAGAACAGAGAGAAGCCATGGCTATGCGAGTGGAGACATATCAACAACCCAAGTCTTTTCTCAATTGATGACCAACGAAGGAAGATAG 2328 0.4214 MRIEKSIQSRKSISLTDSNPSPGSSNLYHTARVFTGASRYEFRIQQAGTHFVRFHFWPFNSRNHRLKSAKFGVSLNGYPILRNFTTKNAVIKEYILRVDDKKLEVLFSPEGGSRFGFVNAIEVFSAPGDLIPDYGPRLLSPSGSEEFYNLSSKILETVHRINVGGSILTPFNDTLWRTWINDEDFLVLKSAAKPALTTHTPNYQEGGATQEIAPDNVYMTAQQMNRDNVTSDSRFNISWKFEVGSHSARHLVRLHFCDIVSKSLNLLYFNVYINGLLAVRDLDLSVLTFHELASPYYMDFVVDSDNSGVTRISVGPSDLSPVSARNAILNGVEIMKLVNFVAQQSEDKKKNIWVLVGSIVVGFVVVCLIVLAVLVALKCKKKKPKPRPAESVGWTPLRVASSYSRMSEGTANPYLGPNLYLGLKIPFADIQLATNNFDRSLVIGSGGFGMVYKGVLRDNTRIAVKRGVPGSRQGLPEFQTEITVLSKIRHRHLVSLVGYCEEQSEMILVYEYMDKGPLKTHLYGSELPPLTWKQRLDICIGAARGLHYLHTGSAQGIIHRDIKSTNILLDENYVAKVADFGLSKSGPCLNETHVSTGVKGSFGYLDPEYFRRQQLTDKSDVYSFGVVLLEVLCARPAVDPLLAREQVNLAEWAMQWQQKGLLAKIIDPHLVGKIKPSSLKKFGETAEKCLAEYGVDRPTMGDVLWNLEYVLQLQETGTRRESHEDSDINTSELPSHSAVPLPHSSNIRTERSHGYASGDISTTQVFSQLMTNEGR* 776
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g0971 775 SMART serkin_6 437 710 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi16g0971 775 FunFam receptor-like protein kinase FERONIA 402 512 - -
Vvi16g0971 775 ProSiteProfiles Protein kinase domain profile. 437 710 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi16g0971 775 Pfam Malectin-like domain 6 336 IPR024788 -
Vvi16g0971 775 Pfam Protein tyrosine and serine/threonine kinase 442 653 IPR001245 GO:0004672|GO:0006468
Vvi16g0971 775 ProSitePatterns Serine/Threonine protein kinases active-site signature. 557 569 IPR008271 GO:0004672|GO:0006468
Vvi16g0971 775 ProSitePatterns Protein kinases ATP-binding region signature. 443 465 IPR017441 GO:0005524
Vvi16g0971 775 Gene3D Phosphorylase Kinase; domain 1 411 512 - -
Vvi16g0971 775 FunFam Receptor-like protein kinase FERONIA 154 339 - -
Vvi16g0971 775 PANTHER OS07G0166700 PROTEIN 424 714 IPR045272 GO:0004714|GO:0006468
Vvi16g0971 775 FunFam Receptor-like protein kinase FERONIA 513 728 - -
Vvi16g0971 775 Gene3D Transferase(Phosphotransferase) domain 1 513 733 - -
Vvi16g0971 775 MobiDBLite consensus disorder prediction 716 746 - -
Vvi16g0971 775 MobiDBLite consensus disorder prediction 1 24 - -
Vvi16g0971 775 CDD STKc_IRAK 443 708 - -
Vvi16g0971 775 SUPERFAMILY Protein kinase-like (PK-like) 420 708 IPR011009 -
Vvi16g0971 775 MobiDBLite consensus disorder prediction 731 746 - -
Vvi16g0971 775 Gene3D - 3 127 - -
Vvi16g0971 775 Gene3D - 154 338 - -
Vvi16g0971 775 MobiDBLite consensus disorder prediction 8 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g0971 Vvi-Chr16 17944977 17949386 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g0971 25 775 Receptor kinase-like Gene Family AT3G46290 51.554 0.0 736
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Vvi16g0971 Malectin_like 1.7e-31 CL0202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g0971 - - vvi:100254190 1483