Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g0970 ATGTGTGTGGTCCGGGACTTCAATTGCCACCAGATTGATTGCCTTTGCAGTATCATGGACCCTAATTCTTTAACCGACAAGAAGTGTGAATGCAGGCTTTTCATTGGTAATCTTGATAAGAGAGTATCAGAGGTTGCTCTGATTAAGATGTTTTCTCCATTTGGAAAGATTGTAGGAGAGGACTTCATGTGGCATACTCGTGGGCCGAAGCGAGGGGAGCCCCGTGGCTTCGCTTTTGTTGAGTTTAGCACAAAAGAGGAAGCTGAACTGGCCAAGGAAAAGATGCATGGAAAATTGATCTGTGGCCGACCATTGACTGTTCGTCTTGCTAATGAGAAATCCTTAATGGAAACAGCAGAAGCTGCTCCCCAAAGGGTTGGCACATCAAACAAATCAAGCCTCACTGGCCGCAGTTCAGGGCAAATGAGCCGGAGTGCTAAAATAGCTGCAATAAAGAACAAGTTAAAGGAAATGGAGGAAGAGAGCAATGGCACCAAGAGGCAGAAGGTTGCTGATAAAGTTTCTTGCAGCAATGGTCTTGACCGATCATCTACCAGAGAATCATAA 567 0.4533 MCVVRDFNCHQIDCLCSIMDPNSLTDKKCECRLFIGNLDKRVSEVALIKMFSPFGKIVGEDFMWHTRGPKRGEPRGFAFVEFSTKEEAELAKEKMHGKLICGRPLTVRLANEKSLMETAEAAPQRVGTSNKSSLTGRSSGQMSRSAKIAAIKNKLKEMEEESNGTKRQKVADKVSCSNGLDRSSTRES* 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g0970 188 CDD RRM_RBM18 32 111 IPR039157 -
Vvi16g0970 188 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 31 112 IPR000504 GO:0003723
Vvi16g0970 188 SUPERFAMILY RNA-binding domain, RBD 29 116 IPR035979 GO:0003676
Vvi16g0970 188 MobiDBLite consensus disorder prediction 123 146 - -
Vvi16g0970 188 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 26 111 - -
Vvi16g0970 188 MobiDBLite consensus disorder prediction 118 188 - -
Vvi16g0970 188 Coils Coil 148 168 - -
Vvi16g0970 188 Gene3D - 20 172 IPR012677 -
Vvi16g0970 188 MobiDBLite consensus disorder prediction 150 168 - -
Vvi16g0970 188 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 33 105 IPR000504 GO:0003723
Vvi16g0970 188 SMART rrm1_1 32 108 IPR000504 GO:0003723
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g0970 26 113 Eukaryotic Initiation Factors Gene Family AT1G49760 43.182 1.31e-11 60.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g0970 K24527 - vvi:100259304 379.793